DoriC

RefSeq

NC_010469

DoriC accession number

pORI00000425

OriC length

500 nt

OriC AT content

0.678

The location of oriC region

3831..4330 nt

Browse in NCBI

OriC map

OriC sequences

CGTTAGAACGGCTTATTTGCCCGTCTAAGCGTTTTAAACCATTCAACATAGAATTAAGCATTAAGTAACTTAAAACGTCGCTGTTGGCTTAATAAGTGGTAATCCGGATACATAACCAGTAATCCATCATTTAAAATAATGCCAAGCAAAAAGAATACTCTGGACAAACTTTATGTACAACGGTGTTCTTTTTGTTTTGTTTTTATTGATTCAATAAAAAGGCGAAGCCTATTATAAGTTTATCTTTTATATTTTAATCTTTTGTTCTTTTGCGCAGTTATAAAGTCAGTATTATCAAGGTTTAACAGGATAATACCCCACAAAAAAACTGTGTATACCCCACAAAAAAACTGTGTATACCCCACAAAAAAACTGTGTATACCCCACAAAGATAAAAATAAATTGTGGTACATGGTGATACAATAAAAGCATAAAGAAATTCCCGTCTAAAAGTTTTTCTTTATGCTTATCCAACAACACGCCCAAAGGAGCGTATTTAT

AT-rich region

The information of repeat sequences

Motif AAACTGTGTATACCCCACAAA

Start	P-value		Site
370	7.09e-13	CCCCACAAAA	AAACTGTGTATACCCCACAAA	GATAAAAATA
348	7.09e-13	CCCCACAAAA	AAACTGTGTATACCCCACAAA	AAAACTGTGT
326	7.09e-13	CCCCACAAAA	AAACTGTGTATACCCCACAAA	AAAACTGTGT
304	7.18e-11	ATCAAGGTTT	AACAGGATAATACCCCACAAA	AAAACTGTGT

Motif CCCGTCTAARMGTTTT

Start	P-value		Site
20	7.13e-11	GGCTTATTTG	CCCGTCTAAGCGTTTT	AAACCATTCA
442	7.51e-10	TAAAGAAATT	CCCGTCTAAAAGTTTT	TCTTTATGCT

Motif CGSTGTTS

Start	P-value		Site
181	8.58e-06	TTATGTACAA	CGGTGTTC	TTTTTGTTTT
79	8.58e-06	CTTAAAACGT	CGCTGTTG	GCTTAATAAG

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000425	100.0	500	0	0	1	500	1	500	924
pORI00000506	84.418	507	67	12	1	500	1	502	488
pORI00000982	83.858	508	67	14	1	500	501	1	470
pORI00000843	79.183	514	81	18	1	500	1	502	333
pORI00000260	77.8	500	81	26	12	500	12	492	281
pORI00000482	77.03	505	103	12	1	500	1	497	278
pORI00000787	78.63	365	58	15	147	500	142	497	224
pORI00000786	78.63	365	58	15	147	500	142	497	224
pORI00000511	78.63	365	58	15	147	500	142	497	224