DoriC

RefSeq

NC_013929.1

Accession number

NC_013929.1

DoriC accession number

ORI93010652

OriC length

1033 nt

OriC AT content

0.355276

The location of oriC region

5138728..5139760 nt

Browse in NCBI

OriC map

OriC sequences

dnaNTGTTGCCGCCTCCTGCTGCTGCCGGCGCTTCTCGCCCTGCCTGGCTTCGTCGTCTGTCTCGGTGTCGGTGGTCCCTGTGACGGGAAGGACACCGGGGACCAGTCTGACGCACACCACTGACACTCGGAGCCTCTCGGGGTCAAGTCGTGACGAGGCGCGGTCGAGCGGCCAAGAGCGAGTTGTGCACAGGACCCACTTCGAAACGGATTCCCAGCTCTCTCTAGTTGGGAGTAGTAGTAGGGCCTGTGGAAACCGTGGATAACCTCGTTTTCGCAGCTCAGGCGGCAAATTTTGTCCACCGGGCCTGTGGGTGGAGGCGGTGGACAACCGGGTGTCTCTGTGGAGAACGGAAAGTTCTGCACACACCGTGCACAGCCCGGGGGTACTTCTCCCCAACGGCGTCCCCAGGTTTACCCGTCTTTCCCACAGCCCAACCAGGCAACTTCGTGTGACGCCTTTCACTCGACACAGTGAGGAAGCGCGTTGGCTTGCCGAACAGTGGACAGGCATGTGGAGAAGCCGTCGATCACTGGGGACAACCGGGCGTGACCTGTGGGCCGTCGGTGGACAACCTCGTCCACAGTCTGTGGATCATCGCTTCGTCCACAGCCTGTGGAGATCTTTCGTCCACGAATCCACAGGGGACTGACCTGGCCTGATGATCCCTCAGCAAGCGCCCCTGTGGACACGATCTGCATAACTTCCCGGTCCCCAGGGTGTGGACGGAAGAAAGTCCCCGAATCTGTGGAGGGAGGCCGTAACCCGGCTGGTATTCGAACACCTGATGTCAATCCGACGACGTCCGAAGCCGGCTCGACGACGTCCGAAGCCGGCTCGACGACGTCCGAAGCCGGCTCGACGACGTCCGAAGCCGGCTCGACGAGGTCCGGAAGCCGCCTCGACGGTGTCCGACGGCCGGCGCGACGGCGTCCGAAGCAGGCCCGGCGGCGTCCGGAGGCCGGCCCCGAGAACGCCGAAGGCGCCCTCGGGAACGCGTCCCGGGGCGCCTTCGGCGGCGTACGACGGCCCTTCGdnaA

dnanTGTTGCCGCCTCCTGCTGCTGCCGGCGCTTCTCGCCCTGCCTGGCTTCGTCGTCTGTCTCGGTGTCGGTGGTCCCTGTGACGGGAAGGACACCGGGGACCAGTCTGACGCACACCACTGACACTCGGAGCCTCTCGGGGTCAAGTCGTGACGAGGCGCGGTCGAGCGGCCAAGAGCGAGTTGTGCACAGGACCCACTTCGAAACGGATTCCCAGCTCTCTCTAGTTGGGAGTAGTAGTAGGGCCTGTGGAAACCGTGGATAACCTCGTTTTCGCAGCTCAGGCGGCAAATTTTGTCCACCGGGCCTGTGGGTGGAGGCGGTGGACAACCGGGTGTCTCTGTGGAGAACGGAAAGTTCTGCACACACCGTGCACAGCCCGGGGGTACTTCTCCCCAACGGCGTCCCCAGGTTTACCCGTCTTTCCCACAGCCCAACCAGGCAACTTCGTGTGACGCCTTTCACTCGACACAGTGAGGAAGCGCGTTGGCTTGCCGAACAGTGGACAGGCATGTGGAGAAGCCGTCGATCACTGGGGACAACCGGGCGTGACCTGTGGGCCGTCGGTGGACAACCTCGTCCACAGTCTGTGGATCATCGCTTCGTCCACAGCCTGTGGAGATCTTTCGTCCACGAATCCACAGGGGACTGACCTGGCCTGATGATCCCTCAGCAAGCGCCCCTGTGGACACGATCTGCATAACTTCCCGGTCCCCAGGGTGTGGACGGAAGAAAGTCCCCGAATCTGTGGAGGGAGGCCGTAACCCGGCTGGTATTCGAACACCTGATGTCAATCCGACGACGTCCGAAGCCGGCTCGACGACGTCCGAAGCCGGCTCGACGACGTCCGAAGCCGGCTCGACGACGTCCGAAGCCGGCTCGACGAGGTCCGGAAGCCGCCTCGACGGTGTCCGACGGCCGGCGCGACGGCGTCCGAAGCAGGCCCGGCGGCGTCCGGAGGCCGGCCCCGAGAACGCCGAAGGCGCCCTCGGGAACGCGTCCCGGGGCGCCTTCGGCGGCGTACGACGGCCCTTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CGACGACGTCCGAAGCCGGCT

Start	P-value		Site
857	1.30e-12	GAAGCCGGCT	CGACGACGTCCGAAGCCGGCT	CGACGAGGTC
836	1.30e-12	GAAGCCGGCT	CGACGACGTCCGAAGCCGGCT	CGACGACGTC
815	1.30e-12	GAAGCCGGCT	CGACGACGTCCGAAGCCGGCT	CGACGACGTC
794	1.30e-12	GATGTCAATC	CGACGACGTCCGAAGCCGGCT	CGACGACGTC
922	1.60e-11	ACGGCCGGCG	CGACGGCGTCCGAAGCAGGCC	CGGCGGCGTC

Motif TSTGBRSAVDCSGTGGAYAACCBSGK

Start	P-value		Site
243	9.28e-13	AGTAGTAGGG	CCTGTGGAAACCGTGGATAACCTCGT	TTTCGCAGCT
308	8.25e-12	ACCGGGCCTG	TGGGTGGAGGCGGTGGACAACCGGGT	GTCTCTGTGG
552	2.43e-11	GGGCGTGACC	TGTGGGCCGTCGGTGGACAACCTCGT	CCACAGTCTG
510	1.31e-10	TGGACAGGCA	TGTGGAGAAGCCGTCGATCACTGGGG	ACAACCGGGC
356	7.13e-10	AACGGAAAGT	TCTGCACACACCGTGCACAGCCCGGG	GGTACTTCTC

Motif YCTGTGGA

Start	P-value		Site
742	1.07e-05	AGTCCCCGAA	TCTGTGGA	GGGAGGCCGT
584	1.07e-05	TCGTCCACAG	TCTGTGGA	TCATCGCTTC
337	1.07e-05	ACCGGGTGTC	TCTGTGGA	GAACGGAAAG
679	3.02e-05	AGCAAGCGCC	CCTGTGGA	CACGATCTGC
610	3.02e-05	TCGTCCACAG	CCTGTGGA	GATCTTTCGT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI93010652	100.0	1033	0	0	1	1033	1	1033	0.0	1908
ORI93010652	86.047	129	15	3	836	963	794	920	1.61e-32	135
ORI93010652	86.047	129	15	3	794	920	836	963	1.61e-32	135
ORI10010046	84.655	782	108	12	5	780	1085	310	0.0	769
ORI10010061	84.244	787	110	13	1	780	1	780	0.0	754
ORI96010199	81.616	718	113	15	79	787	1030	323	0.0	577
ORI96010332	78.979	666	114	21	93	750	41	688	0.0	431
ORI95010914	75.074	674	128	29	92	750	769	121	0.0	278
ORI95010941	76.871	441	84	18	92	523	874	443	0.0	233