DoriC

RefSeq

NC_015957.1

Accession number

NC_015957.1

DoriC accession number

ORI95010914

OriC length

829 nt

OriC AT content

0.354644

The location of oriC region

2011..2839 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGAGGGGCCCGCAGGGGCCACCACGAACCGCTGAAGGGCGCTCCGGGAGGGACAACTCCCGGGACGCCCTTCGTCGTTCATCCCTACGAGCTGTTCGATTCTCGGCCCGGCCGGCCCGGTTCTCCACAGATACGCGGCCCATCCACCGTCCACACCCTGGGGACGTGGAAGTTGTCCCGATCGCGTCCACAGGCTGTCCGGTGGGGAGGGCATCCGCCGAGGTCAGGTGGCTGTGGAATTGTGGCTATCGGGAGTCCACAGACTGTGGATGATCGAGATACCCACAGGCCGCGCATCAGCTTGTCCACCGGCAACCCACAGCCGAAGGCCCGTTGCCCACAGCTTCTCCACACCGCTGTCCACTGTTCGGCAACGAAATGGCCACGGTCACCGGTGCGAGTGAAAGGCGTCACACCAAGGAGGCGGGTTGGGCTGTGGGGAAGGTGGGTAAAACTGGGGACGACGCTGGGGAGAACCGGGCGATGTCTGTGCATCGCATGTGCAGAACTCTTCGGCATCCACAGACAACCCTGGTTGTCCACCGCCGTCACCCACAGGCCCGGTGGACAAAAAACCGCCGCTGACCAGGGAAAAGTCAGTTTTCCACGGTTTCCACAGGCCCTACTACTACGACCACAGAGTTATAGCGAGGAAACCGCTTCGAAGTGGGGCCTGTGCACAACCTCGGGCCGAGCCGCCCGACACCCCGCGCACCGACTTGACCCCGAGCCGCACCGACTGTCGGCGGCGTGCGTCAGACTGGTCTCCGGCTACTCAGCCGACGACGAAGGCCAGCAGGGCGAGCCAGCAACAGCAGGAGGCGGCTTACGdnaN

dnaaGAGGGGCCCGCAGGGGCCACCACGAACCGCTGAAGGGCGCTCCGGGAGGGACAACTCCCGGGACGCCCTTCGTCGTTCATCCCTACGAGCTGTTCGATTCTCGGCCCGGCCGGCCCGGTTCTCCACAGATACGCGGCCCATCCACCGTCCACACCCTGGGGACGTGGAAGTTGTCCCGATCGCGTCCACAGGCTGTCCGGTGGGGAGGGCATCCGCCGAGGTCAGGTGGCTGTGGAATTGTGGCTATCGGGAGTCCACAGACTGTGGATGATCGAGATACCCACAGGCCGCGCATCAGCTTGTCCACCGGCAACCCACAGCCGAAGGCCCGTTGCCCACAGCTTCTCCACACCGCTGTCCACTGTTCGGCAACGAAATGGCCACGGTCACCGGTGCGAGTGAAAGGCGTCACACCAAGGAGGCGGGTTGGGCTGTGGGGAAGGTGGGTAAAACTGGGGACGACGCTGGGGAGAACCGGGCGATGTCTGTGCATCGCATGTGCAGAACTCTTCGGCATCCACAGACAACCCTGGTTGTCCACCGCCGTCACCCACAGGCCCGGTGGACAAAAAACCGCCGCTGACCAGGGAAAAGTCAGTTTTCCACGGTTTCCACAGGCCCTACTACTACGACCACAGAGTTATAGCGAGGAAACCGCTTCGAAGTGGGGCCTGTGCACAACCTCGGGCCGAGCCGCCCGACACCCCGCGCACCGACTTGACCCCGAGCCGCACCGACTGTCGGCGGCGTGCGTCAGACTGGTCTCCGGCTACTCAGCCGACGACGAAGGCCAGCAGGGCGAGCCAGCAACAGCAGGAGGCGGCTTACGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GTTGTCCACNGHT

Start	P-value		Site
598	6.36e-08	GGAAAAGTCA	GTTTTCCACGGTT	TCCACAGGCC
118	1.48e-07	GGCCGGCCCG	GTTCTCCACAGAT	ACGCGGCCCA
354	2.21e-07	TCTCCACACC	GCTGTCCACTGTT	CGGCAACGAA
331	2.83e-07	CCGAAGGCCC	GTTGCCCACAGCT	TCTCCACACC
533	8.76e-07	GACAACCCTG	GTTGTCCACCGCC	GTCACCCACA

Motif CGTCCACAGACT

Start	P-value		Site
252	1.20e-07	GGCTATCGGG	AGTCCACAGACT	GTGGATGATC
183	5.53e-07	GTCCCGATCG	CGTCCACAGGCT	GTCCGGTGGG
515	1.52e-06	AACTCTTCGG	CATCCACAGACA	ACCCTGGTTG
630	2.26e-06	CCTACTACTA	CGACCACAGAGT	TATAGCGAGG
146	2.26e-06	GCCCATCCAC	CGTCCACACCCT	GGGGACGTGG

Motif TGKGSAVAACY

Start	P-value		Site
498	1.47e-07	GTGCATCGCA	TGTGCAGAACT	CTTCGGCATC
444	1.24e-06	GTGGGGAAGG	TGGGTAAAACT	GGGGACGACG
673	3.39e-06	AAGTGGGGCC	TGTGCACAACC	TCGGGCCGAG
466	5.16e-06	GGGACGACGC	TGGGGAGAACC	GGGCGATGTC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI95010914	100.0	829	0	0	1	829	1	829	1531
ORI95010941	83.176	743	107	17	90	823	195	928	664
ORI10010046	76.82	673	118	29	121	769	340	998	344
ORI93010652	75.185	677	122	33	121	769	750	92	278