DoriC

RefSeq

NC_018750.1

Accession number

NC_018750.1

DoriC accession number

ORI96010332

OriC length

841 nt

OriC AT content

0.37931

The location of oriC region

3970939..3971779 nt

Browse in NCBI

OriC map

OriC sequences

dnaNCGGAACCGCCTCCTGCTTGTTGCTGGCTCTTCGTCGACTGCGGGAACCAGTCTGACGTACGCCGCCGACACTCGGTGCTGCTCGGGGTCAAGTCGCGACGAGAGCGCGTCGGAGCTCCGGCGCCGAGTTGTGCACAGGTCCCACTTCGAAGCGAATTCCGGGCTAACTCTATGTGGGAGTAGTAGTAGGGCCTGTGGAAACGGTGGATAACGTCGTTTTCCCAGGTCAGGCCCGGTTTTTTGTCCACTGCGCCTGTGGGTGGAGTCGGTGGACAACCGGGGTGCTCTGTGGACACCCGAAAGTTCTGCACACCCGATACACAGGCCATGGGGAGTTCTCCCCAGCGCTGTCCCCAGCTTTACCCACGTTCCCCACAGCCCAACCGTCCCCCTTGGTGTGACGCCTTTCACTCGACGCGGTGAGAGGGGGTGATTCGTTGCCGAACAGTGGACAGGGGTGTGGAGAAGCTGTGGGCAACCAGGCCCTCCCTGTGGGTTGCCGGTGGACAACCCTTCGGACCCCCTGTGGACGAAAGATTCATCCACAGCCTGTGGAGATCTTTTACCAACAATTCCACAAGGGTCTGACCTGGGGTGATGATCAGTCAGCAGCCCAGCCTGTGGACACGATCCGGATAACTCGACAGTCCCCACCCTGTGGACGGGAGATCATCCCCCAATCTGTGGAGAACCCGCCACCGGAACGGAGTAATCGAACACTCCGCGCTCGTACACAGCTGTGCACAGCGAACAGAGGCGTCCCTTGGAGCGGGTCCGAGAACGCCGAAGGGCGCCCCAGGAGGAGTCCCGGGGCGCCCTTCAGGGGCTTCGACGGCCCTGTGdnaA

dnanCGGAACCGCCTCCTGCTTGTTGCTGGCTCTTCGTCGACTGCGGGAACCAGTCTGACGTACGCCGCCGACACTCGGTGCTGCTCGGGGTCAAGTCGCGACGAGAGCGCGTCGGAGCTCCGGCGCCGAGTTGTGCACAGGTCCCACTTCGAAGCGAATTCCGGGCTAACTCTATGTGGGAGTAGTAGTAGGGCCTGTGGAAACGGTGGATAACGTCGTTTTCCCAGGTCAGGCCCGGTTTTTTGTCCACTGCGCCTGTGGGTGGAGTCGGTGGACAACCGGGGTGCTCTGTGGACACCCGAAAGTTCTGCACACCCGATACACAGGCCATGGGGAGTTCTCCCCAGCGCTGTCCCCAGCTTTACCCACGTTCCCCACAGCCCAACCGTCCCCCTTGGTGTGACGCCTTTCACTCGACGCGGTGAGAGGGGGTGATTCGTTGCCGAACAGTGGACAGGGGTGTGGAGAAGCTGTGGGCAACCAGGCCCTCCCTGTGGGTTGCCGGTGGACAACCCTTCGGACCCCCTGTGGACGAAAGATTCATCCACAGCCTGTGGAGATCTTTTACCAACAATTCCACAAGGGTCTGACCTGGGGTGATGATCAGTCAGCAGCCCAGCCTGTGGACACGATCCGGATAACTCGACAGTCCCCACCCTGTGGACGGGAGATCATCCCCCAATCTGTGGAGAACCCGCCACCGGAACGGAGTAATCGAACACTCCGCGCTCGTACACAGCTGTGCACAGCGAACAGAGGCGTCCCTTGGAGCGGGTCCGAGAACGCCGAAGGGCGCCCCAGGAGGAGTCCCGGGGCGCCCTTCAGGGGCTTCGACGGCCCTGTGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif ARNCKGTGGACAAC

Start	P-value		Site
263	1.65e-08	CTGTGGGTGG	AGTCGGTGGACAAC	CGGGGTGCTC
678	1.80e-08	ATCATCCCCC	AATCTGTGGAGAAC	CCGCCACCGG
198	3.53e-08	GGGCCTGTGG	AAACGGTGGATAAC	GTCGTTTTCC
465	2.09e-07	GGGTGTGGAG	AAGCTGTGGGCAAC	CAGGCCCTCC
497	3.11e-07	CCCTGTGGGT	TGCCGGTGGACAAC	CCTTCGGACC

Motif CASCCTGTGGA

Start	P-value		Site
651	3.56e-07	CGACAGTCCC	CACCCTGTGGA	CGGGAGATCA
614	7.17e-07	GTCAGCAGCC	CAGCCTGTGGA	CACGATCCGG
545	7.17e-07	GATTCATCCA	CAGCCTGTGGA	GATCTTTTAC
519	2.03e-06	ACCCTTCGGA	CCCCCTGTGGA	CGAAAGATTC
485	4.42e-06	CAACCAGGCC	CTCCCTGTGGG	TTGCCGGTGG

Motif AGYTBTGCMCA

Start	P-value		Site
301	2.69e-07	GACACCCGAA	AGTTCTGCACA	CCCGATACAC
126	2.69e-07	TCCGGCGCCG	AGTTGTGCACA	GGTCCCACTT
735	1.44e-06	GCTCGTACAC	AGCTGTGCACA	GCGAACAGAG
333	4.53e-06	GGCCATGGGG	AGTTCTCCCCA	GCGCTGTCCC
355	5.36e-06	CGCTGTCCCC	AGCTTTACCCA	CGTTCCCCAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010332	100.0	841	0	0	1	841	1	841	1554
ORI95030415	81.629	626	93	19	47	661	988	374	499
ORI95010913	79.372	669	110	20	41	690	87	746	446
ORI10010046	79.58	666	100	28	46	688	992	340	444
ORI92510411	79.336	663	109	16	47	690	914	261	440
ORI93010652	79.01	667	112	23	41	688	93	750	431