DoriC

RefSeq

NC_003155.4

Accession number

NC_003155.4

DoriC accession number

ORI10010046

OriC length

1090 nt

OriC AT content

0.359633

The location of oriC region

5287934..5289023 nt

Browse in NCBI

OriC map

OriC sequences

dnaACAGCCACCGCAGCACGTCGCTGAGGGCGCCCCGGGACGATTCCCGAGGGCGCCCTCTTCGTCTTCCCAAGGGCCCCTTCGGCCTCTCCGAGGGCGGCAAGGCGTCCTCCGCCTGCTGCTGCCGAAGGCCCGCTTCGAAGGCCCGCTCGCTACTCCCAAAGGCCCGCTCACTGCTTCCGAGAGCGTTCAGCGCCGTTCCCCAGGACGTCTTTCGCCGGTCCTGAGGCGTCTTTCGCCGCTCTCAAGGACGTTCTTCGCCGCTTCCGAGGCCGCGTGCGGGGCGCCGACGGGCCGTGCACCGTCCACCCGCTGTTCGAATACGAGCCGAGTTACGGCCGCCCTCCACAGATATGCGGACTTTCTCGCGTCCACACCCTGGGGACTGGGAAGTTGTCCAGATCGTGTCCACAGGGTGTGCTGTTAAAAGACCATCGTCCCAGCTCAACAGCTTGTGGATTGGTGGACAGAAGATCTCCACAGACTGTGGACAGAGTGATGATCCACAGCCTGTGCACCAAGTTGTCCACCGGCGGCCCACAGGCTGAGCCCCGTTGTCCCCAGCAAAACCCAGCTTCTCCACACGGCTGTCCACTGTTCGGCAACGCGACGCGCCTGCTCACCGTGTCGAGTGAAAGGCGTCACACCAAGGTGCCGGGTTGGCCTGTGGGGAACGTGGGTAAAGCTGGGGACGGCGTTGGGGAGAAGTGCCCCAAGCCTGTGCATCGAGTGTGCAGAACTTTTCGCTGTCCACAGATGACCCCGGTTGTCCACCGCCTCCACCCACAGGGTCAGTGGACAAAATTTGGGGCCTGACCTGCGAAAACGAGGTTATCCACGGTTTCCACAGGCCCTACTACTACTCCCAACTAGAGAGAGCTGGGAATCCGCTTCGAAGGGGGCCCTGTGCACAACTCGCTGTCTCGGCCCCGGCTGCCGCTCGACGCGACTTGACCCAGGGCGGCAACGACTGTCAGTGCGGTGCGTCAGACTGGTCACCGGTGTCCTGCCCCTCACAGGGATCGACGACACCGAGTCAGACGACGAAGGCCAGGCAGGGCGAGAGCGCCGGCAATAGCAGGAGGCGGCTTACGdnaN

dnaaCAGCCACCGCAGCACGTCGCTGAGGGCGCCCCGGGACGATTCCCGAGGGCGCCCTCTTCGTCTTCCCAAGGGCCCCTTCGGCCTCTCCGAGGGCGGCAAGGCGTCCTCCGCCTGCTGCTGCCGAAGGCCCGCTTCGAAGGCCCGCTCGCTACTCCCAAAGGCCCGCTCACTGCTTCCGAGAGCGTTCAGCGCCGTTCCCCAGGACGTCTTTCGCCGGTCCTGAGGCGTCTTTCGCCGCTCTCAAGGACGTTCTTCGCCGCTTCCGAGGCCGCGTGCGGGGCGCCGACGGGCCGTGCACCGTCCACCCGCTGTTCGAATACGAGCCGAGTTACGGCCGCCCTCCACAGATATGCGGACTTTCTCGCGTCCACACCCTGGGGACTGGGAAGTTGTCCAGATCGTGTCCACAGGGTGTGCTGTTAAAAGACCATCGTCCCAGCTCAACAGCTTGTGGATTGGTGGACAGAAGATCTCCACAGACTGTGGACAGAGTGATGATCCACAGCCTGTGCACCAAGTTGTCCACCGGCGGCCCACAGGCTGAGCCCCGTTGTCCCCAGCAAAACCCAGCTTCTCCACACGGCTGTCCACTGTTCGGCAACGCGACGCGCCTGCTCACCGTGTCGAGTGAAAGGCGTCACACCAAGGTGCCGGGTTGGCCTGTGGGGAACGTGGGTAAAGCTGGGGACGGCGTTGGGGAGAAGTGCCCCAAGCCTGTGCATCGAGTGTGCAGAACTTTTCGCTGTCCACAGATGACCCCGGTTGTCCACCGCCTCCACCCACAGGGTCAGTGGACAAAATTTGGGGCCTGACCTGCGAAAACGAGGTTATCCACGGTTTCCACAGGCCCTACTACTACTCCCAACTAGAGAGAGCTGGGAATCCGCTTCGAAGGGGGCCCTGTGCACAACTCGCTGTCTCGGCCCCGGCTGCCGCTCGACGCGACTTGACCCAGGGCGGCAACGACTGTCAGTGCGGTGCGTCAGACTGGTCACCGGTGTCCTGCCCCTCACAGGGATCGACGACACCGAGTCAGACGACGAAGGCCAGGCAGGGCGAGAGCGCCGGCAATAGCAGGAGGCGGCTTACGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TCCACAGCCTGTGSA

Start	P-value		Site
499	3.90e-09	AGAGTGATGA	TCCACAGCCTGTGCA	CCAAGTTGTC
473	3.90e-09	ACAGAAGATC	TCCACAGACTGTGGA	CAGAGTGATG
441	8.94e-09	TCGTCCCAGC	TCAACAGCTTGTGGA	TTGGTGGACA
367	8.27e-08	CTTTCTCGCG	TCCACACCCTGGGGA	CTGGGAAGTT
404	1.22e-07	CCAGATCGTG	TCCACAGGGTGTGCT	GTTAAAAGAC

Motif CGTYYTTCGCCGBTCCCVAGG

Start	P-value		Site
248	2.11e-11	CTCTCAAGGA	CGTTCTTCGCCGCTTCCGAGG	CCGCGTGCGG
226	3.40e-11	GGTCCTGAGG	CGTCTTTCGCCGCTCTCAAGG	ACGTTCTTCG
205	6.97e-11	TTCCCCAGGA	CGTCTTTCGCCGGTCCTGAGG	CGTCTTTCGC
183	5.70e-10	CTTCCGAGAG	CGTTCAGCGCCGTTCCCCAGG	ACGTCTTTCG

Motif GYTGTCCACNG

Start	P-value		Site
762	5.57e-07	GATGACCCCG	GTTGTCCACCG	CCTCCACCCA
518	5.57e-07	TGTGCACCAA	GTTGTCCACCG	GCGGCCCACA
583	2.59e-06	TCTCCACACG	GCTGTCCACTG	TTCGGCAACG
742	2.96e-06	AGAACTTTTC	GCTGTCCACAG	ATGACCCCGG
827	3.15e-06	CGAAAACGAG	GTTATCCACGG	TTTCCACAGG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI10010046	100.0	1090	0	0	1	1090	1	1090	2013
ORI93010652	84.655	782	108	12	310	1085	780	5	769
ORI95010913	78.378	740	124	31	360	1084	724	6	448
ORI92510411	78.267	727	137	19	365	1084	288	1000	448
ORI96010332	79.518	664	104	25	340	992	688	46	444
ORI95010914	76.751	671	122	26	340	998	121	769	344
ORI95010941	76.075	535	100	22	473	998	359	874	254