DoriC

RefSeq

NC_003888.3

Accession number

NC_003888.3

DoriC accession number

ORI10010061

OriC length

934 nt

OriC AT content

0.362955

The location of oriC region

4269844..4270777 nt

Browse in NCBI

OriC map

OriC sequences

dnaNTGTTGCCGCCTCCTGCTGTTGCCGGCGCTGCTCGCCCTGCTTCGCCTTCGTCGTCTGACCGGTGTCGCCCGCCGCTGTGAGGGGCAGAACACCGGGGACCAGTCTGACGCACCCCACTGACAGTAGGTGCCGTTCGGGGTCAAGTCGTGACGAGGTGCGGTCGGGCCCGAGAGGCCGAGTTGTACACAGGACCCGCTTCGAAACGAATTCCGCTCTCTCTCTAGTCGTCAGTAGTAGTAGGGCCTGTGGATACCGTGGATAACCTCGTTTGCCCAGGTCGGGGCAGGAATTTTGTCCACGGGTCCTGTGGGCGGAGCCGGTGGACAACCGGGCGTATCTGTGGAGAACAGAAAGTTCTGCACACACCGTGCACAGGGAGAGGCGACTTCTCCCCAGCGCCGTCCCCAGCTTTACCCACGTTTCCCACAGCCCAACCAGGCAGCCCGGTGTGACGGCTTTCACTCGACGCGGTGACAGGGCGCGTCACGTTGCCGAACAGTGGACAGGCATGTGGAGAAGCTGGTGATCGCTGGGGACAACCCGGTCCAGTCTGTGGGTTGTCCGTGGACAACTGAATGCACAGCCTGTGGATCATTTCTTTGTCCACAGCCTGTGGAGATCCTTCGTCCACGAATCCACAGGGACCTGACCTGCCCTGATGATCCCTCACCAGGCTTGCCTGTGGACAGGATCGGGACAACTTCCCAGTCCCCAAGGTGTGGACGGAAAAAACTGGCCGAATCTGTGGAGGACGGCCGTAACCCGGCGGGGATTCGAACAGCGGACAGGACAGCCGTACGAGCCGGTGGAGACGCGGGGACGTGCGAGGGGGCATGCGAGGGGCATCCGGGGGGACAGCCTGGGGTTACCCAGGGGCATGGGAAAGGCGCCCCCGGGGTCCCGGAGGCGCCTTCGTGACCGGTGGGGTCGGTCGdnaA

dnanTGTTGCCGCCTCCTGCTGTTGCCGGCGCTGCTCGCCCTGCTTCGCCTTCGTCGTCTGACCGGTGTCGCCCGCCGCTGTGAGGGGCAGAACACCGGGGACCAGTCTGACGCACCCCACTGACAGTAGGTGCCGTTCGGGGTCAAGTCGTGACGAGGTGCGGTCGGGCCCGAGAGGCCGAGTTGTACACAGGACCCGCTTCGAAACGAATTCCGCTCTCTCTCTAGTCGTCAGTAGTAGTAGGGCCTGTGGATACCGTGGATAACCTCGTTTGCCCAGGTCGGGGCAGGAATTTTGTCCACGGGTCCTGTGGGCGGAGCCGGTGGACAACCGGGCGTATCTGTGGAGAACAGAAAGTTCTGCACACACCGTGCACAGGGAGAGGCGACTTCTCCCCAGCGCCGTCCCCAGCTTTACCCACGTTTCCCACAGCCCAACCAGGCAGCCCGGTGTGACGGCTTTCACTCGACGCGGTGACAGGGCGCGTCACGTTGCCGAACAGTGGACAGGCATGTGGAGAAGCTGGTGATCGCTGGGGACAACCCGGTCCAGTCTGTGGGTTGTCCGTGGACAACTGAATGCACAGCCTGTGGATCATTTCTTTGTCCACAGCCTGTGGAGATCCTTCGTCCACGAATCCACAGGGACCTGACCTGCCCTGATGATCCCTCACCAGGCTTGCCTGTGGACAGGATCGGGACAACTTCCCAGTCCCCAAGGTGTGGACGGAAAAAACTGGCCGAATCTGTGGAGGACGGCCGTAACCCGGCGGGGATTCGAACAGCGGACAGGACAGCCGTACGAGCCGGTGGAGACGCGGGGACGTGCGAGGGGGCATGCGAGGGGCATCCGGGGGGACAGCCTGGGGTTACCCAGGGGCATGGGAAAGGCGCCCCCGGGGTCCCGGAGGCGCCTTCGTGACCGGTGGGGTCGGTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AVAASYGGNCGDRYCTGTGGAGAM

Start	P-value		Site
729	5.99e-12	GTGGACGGAA	AAAACTGGCCGAATCTGTGGAGGA	CGGCCGTAAC
324	7.82e-12	GAGCCGGTGG	ACAACCGGGCGTATCTGTGGAGAA	CAGAAAGTTC
495	6.14e-11	CACGTTGCCG	AACAGTGGACAGGCATGTGGAGAA	GCTGGTGATC
790	7.81e-10	AGCGGACAGG	ACAGCCGTACGAGCCGGTGGAGAC	GCGGGGACGT
230	1.09e-09	TCTAGTCGTC	AGTAGTAGTAGGGCCTGTGGATAC	CGTGGATAAC

Motif ACKTTNTSCACAGCCYGTGSA

Start	P-value		Site
597	4.39e-11	GTGGATCATT	TCTTTGTCCACAGCCTGTGGA	GATCCTTCGT
571	2.92e-10	TCCGTGGACA	ACTGAATGCACAGCCTGTGGA	TCATTTCTTT
352	7.38e-10	GGAGAACAGA	AAGTTCTGCACACACCGTGCA	CAGGGAGAGG
417	2.15e-09	AGCTTTACCC	ACGTTTCCCACAGCCCAACCA	GGCAGCCCGG

Motif ACGAAT

Start	P-value		Site
630	1.07e-04	TCCTTCGTCC	ACGAAT	CCACAGGGAC
203	1.07e-04	CCGCTTCGAA	ACGAAT	TCCGCTCTCT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI10010061	100.0	934	0	0	1	934	1	934	0.0	1725
ORI93010652	84.244	787	110	13	1	780	1	780	0.0	754
ORI96010199	81.561	743	123	13	50	785	1060	325	0.0	601
ORI95010934	84.328	134	17	4	212	344	1009	879	2.43e-30	128