DoriC

RefSeq

NC_017765.1

Accession number

NC_017765.1

DoriC accession number

ORI96010199

OriC length

1095 nt

OriC AT content

0.330594

The location of oriC region

5946349..5947443 nt

Browse in NCBI

OriC map

OriC sequences

dnaACCCGCGGTCCAGGCCGGTCCAGGCCGGTCCACGCCGGTCCACGTCGGTCCACGTCAGCCCACGTCGGCCCACGCCGGTCCACGCCGGCCTACGCGGCACCGAGGCGCCTTCGGGACGGAGATCCCGGGGGCGCCTCTTCGCGTCCCCGCCGGCCGTTCCCCCGCGTCCGATGGACGGGCTGAGCGGGCGGGCGAAATCGCCCGCCCGTCGTCGACGGCCGGCTCCCGTGAAGCAGGCGGCACGGCTCGCGTGACGCCGCCGGCACGGCTCCCGTGACGCCGACGGTGCGGCCTGCCGTGGCCATGCGCGCACAGCCGCCCGCCATCCGGTGTTCGATTACTTGCCTGGTTACGGCCACTCTCCACAGATTCGGTGACTTTCTTCCGTCCACATCCTGGGGACTGCGGAGTTGTCCCGAACTGTGTCCACAGGGAAGCCTCGTCCATGGCTTCCGCCCAGCTCAGAAGCCTGTGGAATCGTGGACGAACGATCTCCACAGACTGTGGACAACGCGGAGATCCACAGCCTGTGCACGGAGTTGTCCACCGACGACCCACAGGCTGGGGGCAGTTGTCCCCAGCGTTCCCCAGCTTCTCCACAGCGCTGTCCACTGTTCGGCAACCCGGCGCACCCGCTCACCGCGTCGAGTGAAAGCCGTCACAGGAAGCTGCCGGATTGGGGTGTGGGAAACCTGGGTATTCCTGGGGACACAGCTGGGGAGAACTGCCCTCAGCCTGTGGGCGACGTGTGCAGAACTTTCCGTTCTCCACAGACAGCCCCGGTTGTCCACTGCCTCCACCCACAGGACCGGTGGACAAAATATCCGCGCTGAGCTGGGCAAACGTGGTTATCCACGGTATCCACAGGCCCTACTACTACTCCCGACTAGAGAGAGCTCGGCAATCGTTTCGAAGCGGGGCCTGTGCACAACTCGCCGTCTCGCGCCCGGCTGCCCCTCGGTCGGACTTGACCCCAACGGGCACCTACTGTCAGTGCCGTGCGTCAGACTGGTTCCGGTGTCCTTCCCGTCGAAGAGGGCGGTGACACCGAGTCGGAGGACTCAAGCGCAACGGCAGCATCAGGAGGCGGCTTACGdnaN

dnaaCCCGCGGTCCAGGCCGGTCCAGGCCGGTCCACGCCGGTCCACGTCGGTCCACGTCAGCCCACGTCGGCCCACGCCGGTCCACGCCGGCCTACGCGGCACCGAGGCGCCTTCGGGACGGAGATCCCGGGGGCGCCTCTTCGCGTCCCCGCCGGCCGTTCCCCCGCGTCCGATGGACGGGCTGAGCGGGCGGGCGAAATCGCCCGCCCGTCGTCGACGGCCGGCTCCCGTGAAGCAGGCGGCACGGCTCGCGTGACGCCGCCGGCACGGCTCCCGTGACGCCGACGGTGCGGCCTGCCGTGGCCATGCGCGCACAGCCGCCCGCCATCCGGTGTTCGATTACTTGCCTGGTTACGGCCACTCTCCACAGATTCGGTGACTTTCTTCCGTCCACATCCTGGGGACTGCGGAGTTGTCCCGAACTGTGTCCACAGGGAAGCCTCGTCCATGGCTTCCGCCCAGCTCAGAAGCCTGTGGAATCGTGGACGAACGATCTCCACAGACTGTGGACAACGCGGAGATCCACAGCCTGTGCACGGAGTTGTCCACCGACGACCCACAGGCTGGGGGCAGTTGTCCCCAGCGTTCCCCAGCTTCTCCACAGCGCTGTCCACTGTTCGGCAACCCGGCGCACCCGCTCACCGCGTCGAGTGAAAGCCGTCACAGGAAGCTGCCGGATTGGGGTGTGGGAAACCTGGGTATTCCTGGGGACACAGCTGGGGAGAACTGCCCTCAGCCTGTGGGCGACGTGTGCAGAACTTTCCGTTCTCCACAGACAGCCCCGGTTGTCCACTGCCTCCACCCACAGGACCGGTGGACAAAATATCCGCGCTGAGCTGGGCAAACGTGGTTATCCACGGTATCCACAGGCCCTACTACTACTCCCGACTAGAGAGAGCTCGGCAATCGTTTCGAAGCGGGGCCTGTGCACAACTCGCCGTCTCGCGCCCGGCTGCCCCTCGGTCGGACTTGACCCCAACGGGCACCTACTGTCAGTGCCGTGCGTCAGACTGGTTCCGGTGTCCTTCCCGTCGAAGAGGGCGGTGACACCGAGTCGGAGGACTCAAGCGCAACGGCAGCATCAGGAGGCGGCTTACGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif YCCACAGCCTGKGGRCDRCG

Start	P-value		Site
493	5.18e-12	ACGAACGATC	TCCACAGACTGTGGACAACG	CGGAGATCCA
387	7.25e-10	CTTTCTTCCG	TCCACATCCTGGGGACTGCG	GAGTTGTCCC
519	8.26e-10	AACGCGGAGA	TCCACAGCCTGTGCACGGAG	TTGTCCACCG
727	3.95e-09	GGGAGAACTG	CCCTCAGCCTGTGGGCGACG	TGTGCAGAAC
553	8.53e-09	CCACCGACGA	CCCACAGGCTGGGGGCAGTT	GTCCCCAGCG

Motif GTTMYSSMCNBTCTCCACAG

Start	P-value		Site
847	8.20e-11	GGCAAACGTG	GTTATCCACGGTATCCACAG	GCCCTACTAC
582	2.33e-09	TGTCCCCAGC	GTTCCCCAGCTTCTCCACAG	CGCTGTCCAC
348	4.91e-09	TACTTGCCTG	GTTACGGCCACTCTCCACAG	ATTCGGTGAC
753	7.19e-09	GACGTGTGCA	GAACTTTCCGTTCTCCACAG	ACAGCCCCGG
412	7.75e-09	CTGCGGAGTT	GTCCCGAACTGTGTCCACAG	GGAAGCCTCG

Motif RSAVASCTGGGSAAWCSTG

Start	P-value		Site
890	1.90e-09	TCCCGACTAG	AGAGAGCTCGGCAATCGTT	TCGAAGCGGG
463	2.65e-09	CGCCCAGCTC	AGAAGCCTGTGGAATCGTG	GACGAACGAT
686	2.94e-09	TTGGGGTGTG	GGAAACCTGGGTATTCCTG	GGGACACAGC
828	6.77e-09	AAATATCCGC	GCTGAGCTGGGCAAACGTG	GTTATCCACG
708	2.03e-08	ATTCCTGGGG	ACACAGCTGGGGAGAACTG	CCCTCAGCCT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI96010199	100.0	1095	0	0	1	1095	1	1095	0.0	2023
ORI10010061	81.561	743	123	13	325	1060	785	50	0.0	601
ORI93010652	81.616	718	113	15	323	1030	787	79	0.0	577
ORI95010935	78.67	361	58	17	582	931	515	163	0.0	222
ORI95010934	83.108	148	21	4	755	900	868	1013	2.21e-31	132