DoriC

RefSeq

NC_016582.1

Accession number

NC_016582.1

DoriC accession number

ORI95010941

OriC length

933 nt

OriC AT content

0.335477

The location of oriC region

6604012..6604944 nt

Browse in NCBI

OriC map

OriC sequences

dnaACGCGGCGCACGGCGCGGGTCTCGCGCCGGATTCCGCCCAGGGCGCTTGGGGAGGAACGACTCCCGCAAGCGCCCTTCGTCGTTTCCGGGCCCGTTTCGTCGCTCCGGAGCCGCTCCGGCCGGGCTCCGCTCCGCCCGCCGGCCGCCTCGGCCCGGCCATCCGCGCCTCGGCGACGCGGCGGCAACGCGGACGGCCTGTTCGATTCCATGGCCTCGGAGGCCACTTCTCCACAGATCAGCGGCCGATCCACCATCCACACCCTGGGGATGTCCCGGCTGTCCAGACTGTGTCCACAGGGGCGGCCGCCCACGGAACATCGAGGGAGGTCAGCCGGGTGTGGAATTGTGACAATCGACAGTCCACAGACTGTGGACGACAGAGTTACCCACAGGGCGGTCTCCGCGTTGTCCACTGCCCGCCCACAGCCGAGGCCCCGTCACCCACAGCTTCTCCACACCCTCATCCACTGTTCGGCAAGGAAACGGGCGTGGTCACCGAGACGAGTGAAAGGCATCACACCGACGAGCCGGGTTGGGCTGTGGGGAAGGTGGGTAAACCTGGGGACACAGCTGGGGAGAACCGGGGCTCGCCTGTGCATCGGGTGTGCAGAACTCGGCGGCATCCACAGCAGAGCCTGTTTGTCCACTGCCGTCGCCCACAGGCCCAGTGGATAAAAAACTGATGCTGACCTGCGAAAAGTCAGTTTTCCACGGTTTCCACAGGCCCTACTACTACGACCACTTAGTTAGAGCGAGAAATTCGTTTCGAAGTGGGGCCTGTGCACAACCGGGCTCCGAGCCGCCTGACACCTCGGGCGCCGATTTGACCCCGAGCCGCACCGACTGTCGGCGGCGTACGTCAGACTGGTCCCCGGCGATTGCGCCGACGACGAAGGCCAGCAGGGCGAGCCAGCAACAGCAGGAGGCGGTTCCGdnaN

dnaaCGCGGCGCACGGCGCGGGTCTCGCGCCGGATTCCGCCCAGGGCGCTTGGGGAGGAACGACTCCCGCAAGCGCCCTTCGTCGTTTCCGGGCCCGTTTCGTCGCTCCGGAGCCGCTCCGGCCGGGCTCCGCTCCGCCCGCCGGCCGCCTCGGCCCGGCCATCCGCGCCTCGGCGACGCGGCGGCAACGCGGACGGCCTGTTCGATTCCATGGCCTCGGAGGCCACTTCTCCACAGATCAGCGGCCGATCCACCATCCACACCCTGGGGATGTCCCGGCTGTCCAGACTGTGTCCACAGGGGCGGCCGCCCACGGAACATCGAGGGAGGTCAGCCGGGTGTGGAATTGTGACAATCGACAGTCCACAGACTGTGGACGACAGAGTTACCCACAGGGCGGTCTCCGCGTTGTCCACTGCCCGCCCACAGCCGAGGCCCCGTCACCCACAGCTTCTCCACACCCTCATCCACTGTTCGGCAAGGAAACGGGCGTGGTCACCGAGACGAGTGAAAGGCATCACACCGACGAGCCGGGTTGGGCTGTGGGGAAGGTGGGTAAACCTGGGGACACAGCTGGGGAGAACCGGGGCTCGCCTGTGCATCGGGTGTGCAGAACTCGGCGGCATCCACAGCAGAGCCTGTTTGTCCACTGCCGTCGCCCACAGGCCCAGTGGATAAAAAACTGATGCTGACCTGCGAAAAGTCAGTTTTCCACGGTTTCCACAGGCCCTACTACTACGACCACTTAGTTAGAGCGAGAAATTCGTTTCGAAGTGGGGCCTGTGCACAACCGGGCTCCGAGCCGCCTGACACCTCGGGCGCCGATTTGACCCCGAGCCGCACCGACTGTCGGCGGCGTACGTCAGACTGGTCCCCGGCGATTGCGCCGACGACGAAGGCCAGCAGGGCGAGCCAGCAACAGCAGGAGGCGGTTCCGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TTVTCCACWG

Start	P-value		Site
639	9.83e-07	CAGAGCCTGT	TTGTCCACTG	CCGTCGCCCA
405	9.83e-07	GGTCTCCGCG	TTGTCCACTG	CCCGCCCACA
224	2.52e-06	CGGAGGCCAC	TTCTCCACAG	ATCAGCGGCC
460	3.63e-06	CTCCACACCC	TCATCCACTG	TTCGGCAAGG
382	6.86e-06	GACGACAGAG	TTACCCACAG	GGCGGTCTCC

Motif RCGAVMAVTTMGTTT

Start	P-value		Site
751	1.02e-08	CTTAGTTAGA	GCGAGAAATTCGTTT	CGAAGTGGGG
692	2.19e-08	ATGCTGACCT	GCGAAAAGTCAGTTT	TCCACGGTTT
734	2.82e-08	CCCTACTACT	ACGACCACTTAGTTA	GAGCGAGAAA
190	2.55e-07	GGCAACGCGG	ACGGCCTGTTCGATT	CCATGGCCTC

Motif TSGGCTGTSCRSMGGGTGTGSA

Start	P-value		Site
587	2.42e-10	GAACCGGGGC	TCGCCTGTGCATCGGGTGTGCA	GAACTCGGCG
352	1.60e-09	ATTGTGACAA	TCGACAGTCCACAGACTGTGGA	CGACAGAGTT
272	5.90e-09	TGGGGATGTC	CCGGCTGTCCAGACTGTGTCCA	CAGGGGCGGC
533	7.52e-09	CGAGCCGGGT	TGGGCTGTGGGGAAGGTGGGTA	AACCTGGGGA
320	2.59e-08	CGGAACATCG	AGGGAGGTCAGCCGGGTGTGGA	ATTGTGACAA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI95010941	100.0	933	0	0	1	933	1	933	1724
ORI95010914	83.176	743	107	17	195	928	90	823	664
ORI10010046	76.119	536	98	24	359	874	473	998	254
ORI93010652	77.045	440	79	22	446	874	520	92	233