DoriC

RefSeq

NC_010572.1

Accession number

NC_010572.1

DoriC accession number

ORI92510411

OriC length

1005 nt

OriC AT content

0.345274

The location of oriC region

4324371..4325375 nt

Browse in NCBI

OriC map

OriC sequences

dnaACGACCAACTGCCGGGGCTTCTCCCGGAGCGTTCCTCGGGGCGCCTGTCCCGGACCACCACGGTCCGCGGCAGGCGCCTTTCGCGCTCCCGGGGACCCGCAGCGTGCCGTCCGGGACCTCCGCAGCGGCCGTCCGGAGCCTCCGTCAAGCCGTCCGGGACCTCCGCCGGGGCCGCCCAGAGCCTCCGCCGAGGCTGTTCGAGGCCCGTGTCGAGCGCTCCGGTCACCCCGCGCTGTTCGAATACCGGCTGCTCAGAGGCCCTTCTCCACAGATGGGGGAGAAATCTTCCGTCCACAGCCTGGGGACTGGGAAGTTGTCCATATTGCGTCCACAGGGCGCCCTGCCGATACTCCATCAGGCCAGGTCACGTGGTTGGGGATTTGTGGTCAACCGTGATCCACAGCCTGTGGACAGTTCTTTCGTCCACAGGAGGTGATCGTTGTTGTCCACCGGCGGCCCACAGGTTGAGCCGTGTTGTCCCCAGCTTCGCCCTGCTTCTCCACACCCCTGTCCACTGTTCGGCAACGCAACACCCGCTCTCACCGCCCGGAGTGAAAGGCGTCACACCAAGGTGTCCGATTGGGCTGTGGGGAACGTGGGTAAAGCTGGGGACAGGCCTGGGGAGAAGTGGCCCCCTCCTGTGCATCGGGTGTGCAGAACTTTCGCCCGTCCACAGAAAGCCCTGGTTTTCCACGGGTGCCACCCACAGGACCGGTGGACAAAAAACAGTCGCTGACCTGCGCAAACGACGTTATCCACGGTATCCACAAGGCCTACTACTACTACCACCCAGAGTTAGCCAGGAATCAGCTTCGAAGTGGGGCCTGTGCACAACTCGACCCTCGACCGTCGCGAAGCTCTCGGCCCGACTTGACCCCGAGCAGCAACGACTGTCGGTGCCGTACGTCAGACTGGACCCCGGAGCCTCCCCCGCCCTCGGCAGGGAGCTCCGGTCCAGACGACGAAGGCCAGCAGGGCGAGCGAGCAACAGCAGGAGGCGGTTCCGdnaN

dnaaCGACCAACTGCCGGGGCTTCTCCCGGAGCGTTCCTCGGGGCGCCTGTCCCGGACCACCACGGTCCGCGGCAGGCGCCTTTCGCGCTCCCGGGGACCCGCAGCGTGCCGTCCGGGACCTCCGCAGCGGCCGTCCGGAGCCTCCGTCAAGCCGTCCGGGACCTCCGCCGGGGCCGCCCAGAGCCTCCGCCGAGGCTGTTCGAGGCCCGTGTCGAGCGCTCCGGTCACCCCGCGCTGTTCGAATACCGGCTGCTCAGAGGCCCTTCTCCACAGATGGGGGAGAAATCTTCCGTCCACAGCCTGGGGACTGGGAAGTTGTCCATATTGCGTCCACAGGGCGCCCTGCCGATACTCCATCAGGCCAGGTCACGTGGTTGGGGATTTGTGGTCAACCGTGATCCACAGCCTGTGGACAGTTCTTTCGTCCACAGGAGGTGATCGTTGTTGTCCACCGGCGGCCCACAGGTTGAGCCGTGTTGTCCCCAGCTTCGCCCTGCTTCTCCACACCCCTGTCCACTGTTCGGCAACGCAACACCCGCTCTCACCGCCCGGAGTGAAAGGCGTCACACCAAGGTGTCCGATTGGGCTGTGGGGAACGTGGGTAAAGCTGGGGACAGGCCTGGGGAGAAGTGGCCCCCTCCTGTGCATCGGGTGTGCAGAACTTTCGCCCGTCCACAGAAAGCCCTGGTTTTCCACGGGTGCCACCCACAGGACCGGTGGACAAAAAACAGTCGCTGACCTGCGCAAACGACGTTATCCACGGTATCCACAAGGCCTACTACTACTACCACCCAGAGTTAGCCAGGAATCAGCTTCGAAGTGGGGCCTGTGCACAACTCGACCCTCGACCGTCGCGAAGCTCTCGGCCCGACTTGACCCCGAGCAGCAACGACTGTCGGTGCCGTACGTCAGACTGGACCCCGGAGCCTCCCCCGCCCTCGGCAGGGAGCTCCGGTCCAGACGACGAAGGCCAGCAGGGCGAGCGAGCAACAGCAGGAGGCGGTTCCGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CTCCRCAGCGGSBGBVCAGADCYTYCGYC

Start	P-value		Site
395	7.51e-13	GTCAACCGTG	ATCCACAGCCTGTGGACAGTTCTTTCGTC	CACAGGAGGT
263	1.50e-12	AGAGGCCCTT	CTCCACAGATGGGGGAGAAATCTTCCGTC	CACAGCCTGG
638	3.77e-12	TGGCCCCCTC	CTGTGCATCGGGTGTGCAGAACTTTCGCC	CGTCCACAGA
117	4.56e-12	CGTCCGGGAC	CTCCGCAGCGGCCGTCCGGAGCCTCCGTC	AAGCCGTCCG
160	1.01e-10	CGTCCGGGAC	CTCCGCCGGGGCCGCCCAGAGCCTCCGCC	GAGGCTGTTC

Motif GTTGTCCAC

Start	P-value		Site
441	3.40e-06	GGTGATCGTT	GTTGTCCAC	CGGCGGCCCA
750	7.25e-06	CGCAAACGAC	GTTATCCAC	GGTATCCACA
685	7.25e-06	GAAAGCCCTG	GTTTTCCAC	GGGTGCCACC
312	8.90e-06	GGACTGGGAA	GTTGTCCAT	ATTGCGTCCA
473	1.76e-05	GTTGAGCCGT	GTTGTCCCC	AGCTTCGCCC

Motif GRCCTGTGGASAA

Start	P-value		Site
821	2.74e-07	TTCGAAGTGG	GGCCTGTGCACAA	CTCGACCCTC
709	4.23e-07	CCACCCACAG	GACCGGTGGACAA	AAAACAGTCG
377	6.30e-07	CGTGGTTGGG	GATTTGTGGTCAA	CCGTGATCCA
614	7.47e-07	GCTGGGGACA	GGCCTGGGGAGAA	GTGGCCCCCT
581	1.23e-06	GTGTCCGATT	GGGCTGTGGGGAA	CGTGGGTAAA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI92510411	100.0	1005	0	0	1	1005	1	1005	1857
ORI95010913	88.116	791	76	17	225	1005	783	1	924
ORI95030415	85.824	783	83	19	233	1005	317	1081	806
ORI10010046	78.267	727	137	19	288	1000	365	1084	448
ORI96010332	79.167	672	112	16	261	923	690	38	440