DoriC

RefSeq

NC_015953.1

Accession number

NC_015953.1

DoriC accession number

ORI95010913

OriC length

861 nt

OriC AT content

0.360046

The location of oriC region

3690384..3691244 nt

Browse in NCBI

OriC map

OriC sequences

dnaNCGGAACCGCCTCCTGCTGTTGCTCGCTCGCCCTGCTGGCCTTCGTCGTCTGGTGGAGGCTCCCTGCCGATGGGCCGGGGAGACCGCCGGGGTCCAGTCTGACGTACGGCACCGACACTCGTTGCTGCTCGGGGTCAAGTCGCGCCGAGAGGCGCGTGACGCTCCGAGGCCGAGTTGTGCACAGGGCCCACTTCGAAGCTGATTCCTGGCTAACTCTGAGTGGTAGTAGTAGTAGGCCTTGTGGAAACCGTGGATAACGTCGTTTTCGCAGGTCAGTAGCCGTTTTTTGTCCACCGCGCCTGTGGGCGGCACCCGTGGACAACTAGGCGTCTCTGTGGACACGCGAAAGTTCTGCACACCCGATGCACAGGCGGGGTGCACTTCTCCCCAGGGCTGTCCCCAGCTTTACCCACGTTCCCCACAGCTCAATCGACGACCTTGGTGTGACGCCTTTCACTCTCGGCAGTGAAAGAGGGTGTTGCGTTGCCGAACAGTGGACAGCCCTGTGGGGAACCGGGGAAAACCTGGGGACAACAGGGGCTGGCCTGTGGGCCGCCGGTGGACAACACGGGCGAGCGCCTCAGGGGCCAGATTCTGTCCACAGGCTGTGGATCACGGTTGACCACAAATCCCCAGGCGCGTGACCTGGCCTGATGGAGTATCGGCAGGACGCCCTGTGGACGCAATATGGACAACTTCCCAGTCCCCAGGCTGTGGACGCCAGATTCCTCCTCCATCTGTGGAGAAGGCGCAGGTGACAGCCGTAATTCGAACAGGAGCGGGGCCGGATACGCCGAAGGGCGCCCGGCGGGACCTCTGTATACAGTCCTCGCGGGCGCCCTTCGGCGCGGCTGGGCGGTCGdnaA

dnanCGGAACCGCCTCCTGCTGTTGCTCGCTCGCCCTGCTGGCCTTCGTCGTCTGGTGGAGGCTCCCTGCCGATGGGCCGGGGAGACCGCCGGGGTCCAGTCTGACGTACGGCACCGACACTCGTTGCTGCTCGGGGTCAAGTCGCGCCGAGAGGCGCGTGACGCTCCGAGGCCGAGTTGTGCACAGGGCCCACTTCGAAGCTGATTCCTGGCTAACTCTGAGTGGTAGTAGTAGTAGGCCTTGTGGAAACCGTGGATAACGTCGTTTTCGCAGGTCAGTAGCCGTTTTTTGTCCACCGCGCCTGTGGGCGGCACCCGTGGACAACTAGGCGTCTCTGTGGACACGCGAAAGTTCTGCACACCCGATGCACAGGCGGGGTGCACTTCTCCCCAGGGCTGTCCCCAGCTTTACCCACGTTCCCCACAGCTCAATCGACGACCTTGGTGTGACGCCTTTCACTCTCGGCAGTGAAAGAGGGTGTTGCGTTGCCGAACAGTGGACAGCCCTGTGGGGAACCGGGGAAAACCTGGGGACAACAGGGGCTGGCCTGTGGGCCGCCGGTGGACAACACGGGCGAGCGCCTCAGGGGCCAGATTCTGTCCACAGGCTGTGGATCACGGTTGACCACAAATCCCCAGGCGCGTGACCTGGCCTGATGGAGTATCGGCAGGACGCCCTGTGGACGCAATATGGACAACTTCCCAGTCCCCAGGCTGTGGACGCCAGATTCCTCCTCCATCTGTGGAGAAGGCGCAGGTGACAGCCGTAATTCGAACAGGAGCGGGGCCGGATACGCCGAAGGGCGCCCGGCGGGACCTCTGTATACAGTCCTCGCGGGCGCCCTTCGGCGCGGCTGGGCGGTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CYGKGGRVVAMCBGTGGACAAC

Start	P-value		Site
236	5.15e-10	TAGTAGTAGG	CCTTGTGGAAACCGTGGATAAC	GTCGTTTTCG
513	6.29e-10	CTGTGGGGAA	CCGGGGAAAACCTGGGGACAAC	AGGGGCTGGC
545	6.95e-10	AGGGGCTGGC	CTGTGGGCCGCCGGTGGACAAC	ACGGGCGAGC
674	1.10e-09	GCAGGACGCC	CTGTGGACGCAATATGGACAAC	TTCCCAGTCC
301	1.97e-09	CACCGCGCCT	GTGGGCGGCACCCGTGGACAAC	TAGGCGTCTC

Motif TCMGDDGCCGADTTBTGBMCA

Start	P-value		Site
272	8.47e-11	TTTTCGCAGG	TCAGTAGCCGTTTTTTGTCCA	CCGCGCCTGT
162	1.30e-09	CGCGTGACGC	TCCGAGGCCGAGTTGTGCACA	GGGCCCACTT
580	5.87e-09	GGCGAGCGCC	TCAGGGGCCAGATTCTGTCCA	CAGGCTGTGG
191	7.40e-09	CAGGGCCCAC	TTCGAAGCTGATTCCTGGCTA	ACTCTGAGTG
479	1.37e-08	AAGAGGGTGT	TGCGTTGCCGAACAGTGGACA	GCCCTGTGGG

Motif TCCCCA

Start	P-value		Site
703	2.85e-04	AACTTCCCAG	TCCCCA	GGCTGTGGAC
629	2.85e-04	TGACCACAAA	TCCCCA	GGCGCGTGAC
415	2.85e-04	TTACCCACGT	TCCCCA	CAGCTCAATC
396	2.85e-04	CCCAGGGCTG	TCCCCA	GCTTTACCCA
384	2.85e-04	GGTGCACTTC	TCCCCA	GGGCTGTCCC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI95010913	100.0	861	0	0	1	861	1	861	1591
ORI92510411	88.116	791	76	17	1	783	1005	225	924
ORI95030415	86.607	784	76	19	1	774	1081	317	839
ORI10010046	78.378	740	124	31	6	724	1084	360	448
ORI96010332	79.372	669	110	20	87	746	41	690	446