DoriC

RefSeq

GCF_000026445.2

Accession number

NC_020133.1

DoriC accession number

ORI97227662

OriC length

531 nt

OriC AT content

0.418079

The location of oriC region

6208425..6208955 nt

Browse in NCBI

OriC map

OriC sequences

rpmHGACATTCTCCTCGGTGTCTCTGGCATAACCAACCGGCCGCCAACATCCTCACTGTCGGCCGGAGGTGGTCTCGCTACTGGCCGGCGCGGTCCCTCAATACAAGATTCAGGTCGCAGCCGCATCGCCTACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCTCCTGGTCAAACCTCGCCAGCCTCAATAGACCCACCCTGAACCGAGTCGACCGCCAAATCTGAGTCACAAAACCACCCTCACAGCCAACCCTCAACCGAATACCAGAGAACTGTTGGCAGCCGCACCGAAAACTGTTAGCTTCGGGCAGTGCTGTTTTCGGATTGAAACGGCGGCCGACAATGAAGCGAGGATGGCGGATCAACTAGCTGCCCAAACAACCGCTTGGTTGTACGCAGCGCGGAGATCGCGAGCCGTTGCCGATAGGCTGTGGCCCGCCAGTGGTCGTCCTTTCCGCACCTGTGCATAACGGTGTGGATAGTGTGGCCCATAATTCCACTGCTATGTCGGATCAGGGAGATGCGTCGdnaA

rpmhGACATTCTCCTCGGTGTCTCTGGCATAACCAACCGGCCGCCAACATCCTCACTGTCGGCCGGAGGTGGTCTCGCTACTGGCCGGCGCGGTCCCTCAATACAAGATTCAGGTCGCAGCCGCATCGCCTACTTTCGGGCGACTGTTTGAGGGTACTGACGAGCCTTCTCCTGGTCAAACCTCGCCAGCCTCAATAGACCCACCCTGAACCGAGTCGACCGCCAAATCTGAGTCACAAAACCACCCTCACAGCCAACCCTCAACCGAATACCAGAGAACTGTTGGCAGCCGCACCGAAAACTGTTAGCTTCGGGCAGTGCTGTTTTCGGATTGAAACGGCGGCCGACAATGAAGCGAGGATGGCGGATCAACTAGCTGCCCAAACAACCGCTTGGTTGTACGCAGCGCGGAGATCGCGAGCCGTTGCCGATAGGCTGTGGCCCGCCAGTGGTCGTCCTTTCCGCACCTGTGCATAACGGTGTGGATAGTGTGGCCCATAATTCCACTGCTATGTCGGATCAGGGAGATGCGTCGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif ACTGTTDG

Start	P-value		Site
275	1.09e-05	ATACCAGAGA	ACTGTTGG	CAGCCGCACC
139	1.90e-05	CTTTCGGGCG	ACTGTTTG	AGGGTACTGA
297	2.78e-05	CGCACCGAAA	ACTGTTAG	CTTCGGGCAG
51	4.46e-05	CAACATCCTC	ACTGTCGG	CCGGAGGTGG

Motif ACCCTSAABMGA

Start	P-value		Site
253	3.38e-07	CTCACAGCCA	ACCCTCAACCGA	ATACCAGAGA
199	5.11e-07	CAATAGACCC	ACCCTGAACCGA	GTCGACCGCC
184	1.31e-06	AAACCTCGCC	AGCCTCAATAGA	CCCACCCTGA
90	6.83e-06	GCCGGCGCGG	TCCCTCAATACA	AGATTCAGGT
343	9.22e-06	ACGGCGGCCG	ACAATGAAGCGA	GGATGGCGGA

Motif TKKCGGAT

Start	P-value		Site
321	8.16e-06	GCAGTGCTGT	TTTCGGAT	TGAAACGGCG
509	2.99e-05	TCCACTGCTA	TGTCGGAT	CAGGGAGATG
358	4.43e-05	GAAGCGAGGA	TGGCGGAT	CAACTAGCTG
421	7.90e-05	TCGCGAGCCG	TTGCCGAT	AGGCTGTGGC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92310403	99.247	531	4	0	1	531	1	531	0.0	959
ORI60040083	84.507	142	13	9	55	191	64	201	1.06e-31	132
ORI96010627	83.571	140	15	5	56	191	282	417	1.77e-29	124
ORI96010623	83.571	140	15	5	56	191	65	200	1.77e-29	124
ORI95011027	83.571	140	15	5	56	191	261	396	1.77e-29	124
ORI95011026	82.734	139	18	4	56	191	300	435	8.22e-28	119
ORI96010622	82.734	139	18	4	56	191	300	435	8.22e-28	119