DoriC

RefSeq

NC_014729.1

DoriC accession number

aORI10010169

OriC length

1237 nt

OriC AT content

0.5182

The location of oriC region

189801..191037 nt

Browse in NCBI

OriC map

OriC sequences

CCTGTCCTCCCGCACCTCCCGAGTTATCGTCGTGGAGGGGCGTATGGAGTACTCACATTTCTGAGGTCACTTAAGCACTACGTCAGACGCCGGTCACATTCACGTCTCCTTTATCAGACCGAATCCGAATTAACGTCAGCATACAGTCCGAACCGAAAACGCACGACAGAAAGAGCATACGAATATTTTCGAGATTAACACGAGACAGTCGGCATTGACACGATATGGGGAGAATCCTGACAAAGACGTTGTTTCCACGTCTTATGGTGATCACCACGACATATGGTAACAAGAGGCTAGATTAATAAGTATCATCGGTTCTGGCGCTTCTCTTCTGTCGAGAGTGTGTCTCCCTTTCAGTTGAGCTTGTTCTTCAGTTCGAAGTGAAACGTCCCCATCCCCGGTGTTTCGGGTCGAACTGATGTGAGAGTAGGGTCGTGAAAATAGCCGATTCGAACCGTCATCGTAACGACTACCAATGTATATCCGAATGGAACTGTCGTTCGAAGTGAAATTGGGGGTAGTGTCGGCGGAACACCCCCACCCCTTCGTTTCGGGTGGAACTCGAAAAGACCACCCCCGGTGGCTCGTGGAGAACACTAGTGGCGCATTAATACAAAGAGATAGTTGTTGCAAAATACTATTCTTCTCTACTACGGGTCCTGTTGAACGGTATCCATGATAAAACCCTCGCTTCGAAATAGTCGGTTCGAGGCCCCCCCACCCCTGTTTTCACGTCTCGACCTGAAACGAAGGGGTGGGGGAGGTCACCCACCCCACCGTTTCGAGTCCATAGCCAATCCCGACCACCAAAAAGCCCAATCTCAGCTAGTACAACCCATTATACTCAGTGATCTAGACCCGAAACACTCCCCTTGAAATCCCCTCGACCCCTCCTTTCAACTCGAGCAACCACTCCCCAATTATTTCTACACATTAGAATAAATCGAAATAATAACAATAACAATAACAATAACAATAACAATAACAATAACAATAACAATAACAATAATTAATCCACAGTGTTGTCCTTACGTTGTCCGCTCGCTTGCCCTCGACGGAACACGATAGGAACTGATAGACAAGTTTTTTGTAGCACCTGTTCGTTTGGTTCGTCTGCATCATCTGGACGCTCCACTGTCGTGCCTCTCGTGGAATACCGCAGTCTCATGCGGTGTTTCGACGGTTAAGGGCCACTGACGGAGTGTATTCCAGTCGAAACAGGGGGGATTCACAT

ORB AT-rich region

The information of repeat sequences

Motif CMCCMHCCCCGBYGTYTCGDGTCGAACTS

Start	P-value		Site
393	2.74e-16	AGTGAAACGT	CCCCATCCCCGGTGTTTCGGGTCGAACTG	ATGTGAGAGT
538	5.22e-14	CGGCGGAACA	CCCCCACCCCTTCGTTTCGGGTGGAACTC	GAAAAGACCA
572	8.30e-12	AACTCGAAAA	GACCACCCCCGGTGGCTCGTGGAGAACAC	TAGTGGCGCA
719	1.36e-11	TTCGAGGCCC	CCCCACCCCTGTTTTCACGTCTCGACCTG	AAACGAAGGG
769	3.70e-11	TGGGGGAGGT	CACCCACCCCACCGTTTCGAGTCCATAGC	CAATCCCGAC

Motif AATAACAATAA

Start	P-value		Site
996	4.82e-07	TAACAATAAC	AATAACAATAA	CAATAATTAA
984	4.82e-07	TAACAATAAC	AATAACAATAA	CAATAACAAT
972	4.82e-07	TAACAATAAC	AATAACAATAA	CAATAACAAT
954	4.82e-07	AAATCGAAAT	AATAACAATAA	CAATAACAAT
935	3.29e-06	TATTTCTACA	CATTAGAATAA	ATCGAAATAA

Motif CKDTNKTTCGAMGTGDAABGG

Start	P-value		Site
1173	1.80e-10	CAGTCTCATG	CGGTGTTTCGACGGTTAAGGG	CCACTGACGG
497	1.97e-09	CCGAATGGAA	CTGTCGTTCGAAGTGAAATTG	GGGGTAGTGT
247	3.63e-09	CTGACAAAGA	CGTTGTTTCCACGTCTTATGG	TGATCACCAC
372	2.00e-08	TGAGCTTGTT	CTTCAGTTCGAAGTGAAACGT	CCCCATCCCC
20	4.88e-08	CCGCACCTCC	CGAGTTATCGTCGTGGAGGGG	CGTATGGAGT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010169	100.0	1237	0	0	1	1237	1	1237	0.0	2285
aORI10010300	97.436	39	1	0	526	564	420	458	1.61e-12	68
aORI10010137	96.97	33	0	1	534	566	223	254	1.26e-08	55
aORI10010009	96.97	33	0	1	534	566	199	230	1.26e-08	55