DoriC

RefSeq

NZ_CP009505.1

DoriC accession number

aORI10010278

OriC length

1471 nt

OriC AT content

0.3549

The location of oriC region

4210957..959 nt

Browse in NCBI

OriC map

OriC sequences

CTTATGTAATTATTTTTTATTAACTAGGGTTTTTCGTACTGCAATACAGCTGTATATTTTTATATCTGATTGTCCACATTTTTGAATACATCCATGTATCCTTATATTTTTATAAGTTTTTTGAATTTTTCATTATTTTACCTGTCATTATACAAAATTTCAGAAAATAATTTTATATAGTTAGGATTGAGAGATTGAATGGCTTTTTCCTAAAGTTACTTCTGATTTCCTAAATTTACTCCTGCTTTTTATGCCGTTGTTTTTAACCTTGGCATTTTTTTTATTTTCATACAGTTGATTTTAATATTACGATCTTAAATAAAAAATATTTTTATTGTTTCAGTGGAAATGAAGGGGTTATAATTTATCTAATTTTTTCCACCCGAAAGAGGGGATTCGGCCTCACTCTCCATTAATCTCCCATTTATGGCCTGATCTCCAAATTTTTATTTCAATCTTAAGAATGCCTTTTCCTATTGTTTTTAGCTTGGGATTTGATGGTCTCGGCCATTTCCATTGGAAACGGGGGGGTCTTCACCATAACTATTAATAAGGTTTACTTCCATTGCATCTACTGCAAATGTGGTCCTATGTCGGTTATTTATATACCGATATCACCTTAAATTTTGGTCAAAGAGGAGGGAAGGGTACAGGAAGTTATCAGGATTTGAGGTTCCTGAAGACTTATGTCCCCAAATCGGTTATGGTGCAAAGACTGCGGAATCCCTATTGTTGAACTCCGATTGCCAGGTCTTTGTCTATAATCGAAACTTCATTTCCATTCACAGGGTCCTTTTTGCCAAATTTCAATCAGGAGTGAATGGTTAAAAAATGGATCTTCCGATTCAAAAAACTTACAAATAACACTTTAATACAATGCTTGGTATCTCTCTCCACTATTCCATTGGTAAGGAAGTTAATTCGGAGGAGCAGGAGATGGGATCAGGCATGGAAAAACCGTGGAAATGAATTAGATCTTACATCGGGTCTGGTTTTTATGACCCCCCCGTGAAAAAACTCTACTTACCTGTCACTCCCAGGGTATGAAGATTGCCTGATTCAAAGGGCTCCGTTTCCGGGGTCCTCAAGATTCAGAACCCGTAATTACAGAATCCCGGGATGACATATTCTGCAATCCGATGCTTCCGGATATCATAATACATCGAATCATAATACATCGAATCATAATACATCGAATCATAATACATCGAATCATAATACATCGAATCATAATACATCGAAATTTGCATGTAATTCCTGCGTTCACGACTAAATTAACCCCAACGACTAACTTGATCTCCGGATCCAGAAAGCTGTAGATTTAAACGGCAGGTTTCAAGTTTAAAGCTGCTAAATTAAATCGTTTGAAAATGAAGTTGTAAAATGCTCGTAGTGGTTTAAAATTGTGCGAATTCACTCCTAATACATTCCAGTTGTTTGCGATTAATTTGTTGCAAGAAGAGGGTCATTC

ORB AT-rich region

The information of repeat sequences

Motif ATCATAATACATCGA

Start	P-value		Site
1227	2.95e-09	AATACATCGA	ATCATAATACATCGA	AATTTGCATG
1212	2.95e-09	AATACATCGA	ATCATAATACATCGA	ATCATAATAC
1197	2.95e-09	AATACATCGA	ATCATAATACATCGA	ATCATAATAC
1182	2.95e-09	AATACATCGA	ATCATAATACATCGA	ATCATAATAC
1167	2.95e-09	AATACATCGA	ATCATAATACATCGA	ATCATAATAC

Motif GRARHGARGGG

Start	P-value		Site
638	1.78e-07	TGGTCAAAGA	GGAGGGAAGGG	TACAGGAAGT
346	1.28e-06	TGTTTCAGTG	GAAATGAAGGG	GTTATAATTT
520	2.38e-06	ATTTCCATTG	GAAACGGGGGG	GTCTTCACCA
384	2.59e-06	TTTTTCCACC	CGAAAGAGGGG	ATTCGGCCTC
814	2.88e-06	ATTTCAATCA	GGAGTGAATGG	TTAAAAAATG

Motif GATYTCMNGATYCARAAVVC

Start	P-value		Site
1295	5.93e-13	CGACTAACTT	GATCTCCGGATCCAGAAAGC	TGTAGATTTA
835	2.60e-09	TTAAAAAATG	GATCTTCCGATTCAAAAAAC	TTACAAATAA
1049	3.66e-09	AGGGTATGAA	GATTGCCTGATTCAAAGGGC	TCCGTTTCCG
1081	9.80e-09	CGTTTCCGGG	GTCCTCAAGATTCAGAACCC	GTAATTACAG
665	1.33e-08	AAGTTATCAG	GATTTGAGGTTCCTGAAGAC	TTATGTCCCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010278	100.0	1471	0	1	1471	1	1471	0.0	2717
aORI10010285	89.189	74	8	512	585	987	1060	3.18e-20	94
aORI10010284	89.189	74	8	512	585	987	1060	3.18e-20	94
aORI10010283	89.189	74	8	512	585	986	1059	3.18e-20	94
aORI10010282	89.189	74	8	512	585	1029	1102	3.18e-20	94
aORI10010281	89.189	74	8	512	585	987	1060	3.18e-20	94
aORI10010192	89.189	74	8	512	585	716	643	3.18e-20	94
aORI10010018	89.189	74	8	512	585	600	527	3.18e-20	94