DoriC

RefSeq

NC_014961.1

DoriC accession number

aORI10010367

OriC length

346 nt

OriC AT content

0.5116

The location of oriC region

1314335..41 nt

Browse in NCBI

OriC map

OriC sequences

GGCTTCCAGTCGTAATAAGGTGTGGGAGGATTAGTGGACCGGCCGGGACTTGAACCCGGGACCTCTCGGATGCCAACCGAGCGCTCTTCCAGGCTGAGCTACCGGCCCATCGCACTGTGTCTATCACCGTAGGGGGTTTTAAGATTTTCCACCCTGAAAAGAGGCGTCTTCAAGGATGCCTCCAGGCCGAAGCGGAGAGACTAGTTGTAGCCAACTCCTGGCAGGGATAAAATAGAGGTTGCTACATATTACAACCGAAAGCCTCGCTTTTCAAGGCGGGGTTGAAGGTTTATAGGCTTGTTTTTTTTTATGTATAGGTGATGGTGATGAGGAAAGGTATTTAGCG

ORB AT-rich region

The information of repeat sequences

Motif YTTCMAGGCTG

Start	P-value		Site
86	2.11e-07	ACCGAGCGCT	CTTCCAGGCTG	AGCTACCGGC
168	4.65e-06	AAAGAGGCGT	CTTCAAGGATG	CCTCCAGGCC
179	5.83e-06	TTCAAGGATG	CCTCCAGGCCG	AAGCGGAGAG
269	6.38e-06	AAGCCTCGCT	TTTCAAGGCGG	GGTTGAAGGT
146	9.66e-06	GTTTTAAGAT	TTTCCACCCTG	AAAAGAGGCG

Motif MTDMCRRCCSADMGC

Start	P-value		Site
70	5.11e-09	GACCTCTCGG	ATGCCAACCGAGCGC	TCTTCCAGGC
248	4.87e-08	GTTGCTACAT	ATTACAACCGAAAGC	CTCGCTTTTC
99	2.00e-07	CCAGGCTGAG	CTACCGGCCCATCGC	ACTGTGTCTA

Motif CCGGGAC

Start	P-value		Site
56	6.01e-05	GGACTTGAAC	CCGGGAC	CTCTCGGATG
43	6.01e-05	AGTGGACCGG	CCGGGAC	TTGAACCCGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010367	100.0	346	0	0	1	346	1	346	0.0	640
aORI10010364	98.765	81	1	0	33	113	124	204	1.96e-36	145
aORI10010384	93.75	96	2	3	17	111	284	376	2.53e-35	141
aORI10010365	98.684	76	1	0	33	108	117	192	1.18e-33	135
aORI10010366	98.684	76	0	1	34	109	227	301	4.24e-33	134
aORI10010368	98.649	74	1	0	35	108	197	124	1.53e-32	132
aORI10010264	96.104	77	3	0	33	109	402	326	7.1e-31	126
aORI10010050	96.053	76	3	0	34	109	26	101	2.55e-30	124
aORI10010051	93.22	59	4	0	54	112	1	59	3.35e-19	88
aORI10010099	97.297	37	0	1	74	109	203	167	2.03e-11	62