DoriC

RefSeq

NC_011766.1

DoriC accession number

aORI10010364

OriC length

350 nt

OriC AT content

0.3914

The location of oriC region

1279562..1279911 nt

Browse in NCBI

OriC map

OriC sequences

AAGTAAACACCCAAAGCTATATATGTTCTATACTTTTTTCTAAACCTATTTCTAGAAATCGTTAAACGATTTTTAAAGATAATGCCCATTATATCAACTCATTTTTTCCACTATTGGGAAAAAAGTGGACCGGCCGGGACTTGAACCCGGGACCTCTCGGATGCCAACCGAGCGCTCTTCCAGGCTGAGCTACCGGCCCACCGCTTTTAGATTAATGATTCAAGGGGTTTTAAGATTTTCCTAGGCAGTTGCTCTCAGGGAAAAAATAAATATTTGAAGGGAGATATGGGATGTCTAGTATTATTTATAGCTATAGTGTTTAACCGTATCAAAGCTTATGGGTGTGTATC

ORB AT-rich region

The information of repeat sequences

Motif ACCGRSCS

Start	P-value		Site
129	3.24e-06	AAAAAAGTGG	ACCGGCCG	GGACTTGAAC
192	6.34e-06	AGGCTGAGCT	ACCGGCCC	ACCGCTTTTA
167	2.72e-05	TCGGATGCCA	ACCGAGCG	CTCTTCCAGG

Motif GGGASMTMTSGGATGYC

Start	P-value		Site
149	8.84e-12	ACTTGAACCC	GGGACCTCTCGGATGCC	AACCGAGCGC
279	6.25e-10	AATATTTGAA	GGGAGATATGGGATGTC	TAGTATTATT

Motif CAAAGC

Start	P-value		Site
330	1.88e-04	TTAACCGTAT	CAAAGC	TTATGGGTGT
12	1.88e-04	AGTAAACACC	CAAAGC	TATATATGTT

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010364	100.0	350	0	0	1	350	1	350	0.0	647
aORI10010365	96.591	88	3	0	112	199	105	192	5.51e-37	147
aORI10010367	98.765	81	1	0	124	204	33	113	1.98e-36	145
aORI10010384	98.684	76	1	0	125	200	299	374	1.19e-33	135
aORI10010366	98.701	77	0	1	125	201	227	302	1.19e-33	135
aORI10010368	98.649	74	1	0	126	199	197	124	1.54e-32	132
aORI10010264	96.154	78	3	0	124	201	402	325	2e-31	128
aORI10010050	96.154	78	3	0	125	202	26	103	2e-31	128
aORI10010051	94.545	55	3	0	145	199	1	55	1.22e-18	86
aORI10010099	81.443	97	3	7	120	201	262	166	1.59e-12	66