DoriC

RefSeq

NZ_CP011639

DoriC accession number

pORI00000729

OriC length

1384 nt

OriC AT content

0.5513

The location of oriC region

67775..69158 nt

Browse in NCBI

OriC map

OriC sequences

GTTTTTCTCCCGCCCGTTTGGGCTACTGGATTAAGGTAGGGAGCCATTCCCAACCGACAAATTCAGTATACCATCACATGATGGTAATGCAATTGTTTTATTGATTTACAATGTAAAGACACAATAAATACAGCAAATGCTTTACGCTGTTGAACCGTGTTTTCAAAGAGGCGCGAACGGCTGTCACATTTTGTATACTCGTTACATCGCGCCGGGGACGTTCGCCAGTACTGGCGAACCAACAAGCCTGGATATGAGCAATAACCCCCCTCCCCCCTGCTAAGCCAATTTCTGGCTATCAGACTGCGTTTAGCCTGTCGCAGTTAGCGCGTGAGCTTGCGAACGGTACGCCGGGACAGGGTGAAGCACTGGCGCGGGGCGCTGTATCTGCGCGTTATGAGGTGCGTTAGCAGCGAATTACGGGGCGTGTTGCTGAAACCGATTGATGTCTGACAGCAAAAAATGAATCCGGGCGTCAGCTGGAAATCAACAATTGCCAGCAAAAAACAGATGGCCATCATCGCCGGTTGCGATATTTTGCTGGCATCCTGTGCAAGCGCAGTTCACGGCAAGTTAATTTCCATCTTGTTACGTTAAACGAGCTGTATGCTGTTCTAAGCGGGTTTAAACCGTTTCGTTGAATCCTGCTAGGTTAAACCCACTTAAAACGCCTCTGAGGGCTTCTGAGTGTGTTTTGCTATTGGATCGGGAAAGGATCGTAACTGGATCTTTTTCAAAGAGATCCCACCGCTCGCCGCAGTCTTTGGCTGAGGCGTACCGCAGGAGCATAGCGACGAGGAACGAACAGCCAAAGCGAGGAAGCGGAATATCTGCTGTTCTGGCAGAAAAGCACGTACACACAATGGCTAAAATATGAACATCTTGCGAGTATACCCTGCTAACGAGAGCTACAAGGATCTATCCTCTAGGTTTATGCCGGTTTATCCACAGGCACTGTGCATTAAAAGACTTCTCTTTTCTTTTCTTTTCTTTAAAAACTTAAAAACTTAGGCGTGTGTAATGTATTGATATTGAATAGTAAAAATAGCTAACCATGAGAGCTTAGTACGTCAAACATGAGTACTTACCACGTCAAACATGAGTGCTTACCACGTCAAACATGAGTGCTTACCACGTCAAGCATGAGTACTTACCACGTTAAACATGAGCACTTACCACGTCTAATCAACAGATCGAGAGCATGATATGTAGATCTTTGTTTCTTCGTATAGAAAGATATCTCGTAGGAGTGATTTTCTTGTTTTACGCATCGCCTTTTAGACAGTTTGCAGAAACTAAACATGAGCGCCTACCACGTTAAACATGAGTTTTTTTTATTGACTCTCATGTATAAGGGGTTAGACTGTTTATTATTGAGTCAAAT

AT-rich region

The information of repeat sequences

Motif AAVCATGAGHGCTTACCACGTYAAACATGAGTDCTTACCAC

Start	P-value		Site
1095	1.65e-24	TTACCACGTC	AAACATGAGTGCTTACCACGTCAAACATGAGTGCTTACCAC	GTCAAGCATG
1139	2.11e-22	TTACCACGTC	AAGCATGAGTACTTACCACGTTAAACATGAGCACTTACCAC	GTCTAATCAA
1051	5.83e-22	AAAAATAGCT	AACCATGAGAGCTTAGTACGTCAAACATGAGTACTTACCAC	GTCAAACATG
1298	1.97e-20	TGCAGAAACT	AAACATGAGCGCCTACCACGTTAAACATGAGTTTTTTTTAT	TGACTCTCAT

Motif CGCBSGBYGCDRTMTYTKSSYGDBRYSHDSYGCRDKMGCA

Start	P-value		Site
749	1.48e-17	GAGATCCCAC	CGCTCGCCGCAGTCTTTGGCTGAGGCGTACCGCAGGAGCA	TAGCGACGAG
522	1.82e-17	TGGCCATCAT	CGCCGGTTGCGATATTTTGCTGGCATCCTGTGCAAGCGCA	GTTCACGGCA
373	3.15e-17	GAAGCACTGG	CGCGGGGCGCTGTATCTGCGCGTTATGAGGTGCGTTAGCA	GCGAATTACG

Motif CCCCCC

Start	P-value		Site
272	1.13e-04	TAACCCCCCT	CCCCCC	TGCTAAGCCA
265	1.13e-04	TGAGCAATAA	CCCCCC	TCCCCCCTGC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000729	100.0	1384	0	0	1	1384	1	1384	0.0	2556
pORI00001189	100.0	523	0	0	862	1384	1	523	0.0	966
pORI00001188	100.0	523	0	0	862	1384	523	1	0.0	966
pORI00000566	100.0	373	0	0	1012	1384	1	373	0.0	689
pORI00000546	85.142	599	83	6	165	760	42	637	0.0	608
pORI00000697	78.186	463	72	27	746	1194	689	242	0.0	268
pORI00000874	96.226	53	2	0	411	463	1	53	4.78e-18	88