DoriC

RefSeq

NZ_CP029429

DoriC accession number

pORI00001188

OriC length

523 nt

OriC AT content

0.631

The location of oriC region

52789..53311 nt

Browse in NCBI

OriC map

OriC sequences

ATTTGACTCAATAATAAACAGTCTAACCCCTTATACATGAGAGTCAATAAAAAAAACTCATGTTTAACGTGGTAGGCGCTCATGTTTAGTTTCTGCAAACTGTCTAAAAGGCGATGCGTAAAACAAGAAAATCACTCCTACGAGATATCTTTCTATACGAAGAAACAAAGATCTACATATCATGCTCTCGATCTGTTGATTAGACGTGGTAAGTGCTCATGTTTAACGTGGTAAGTACTCATGCTTGACGTGGTAAGCACTCATGTTTGACGTGGTAAGCACTCATGTTTGACGTGGTAAGTACTCATGTTTGACGTACTAAGCTCTCATGGTTAGCTATTTTTACTATTCAATATCAATACATTACACACGCCTAAGTTTTTAAGTTTTTAAAGAAAAGAAAAGAAAAGAGAAGTCTTTTAATGCACAGTGCCTGTGGATAAACCGGCATAAACCTAGAGGATAGATCCTTGTAGCTCTCGTTAGCAGGGTATACTCGCAAGATGTTCATATTTTAGCCATT

AT-rich region

The information of repeat sequences

Motif GACGTGGTAAGHACTCATGTTTRACGTGGTAAGCDCTCATG

Start	P-value		Site
247	2.55e-25	ACTCATGCTT	GACGTGGTAAGCACTCATGTTTGACGTGGTAAGCACTCATG	TTTGACGTGG
203	4.55e-23	CTGTTGATTA	GACGTGGTAAGTGCTCATGTTTAACGTGGTAAGTACTCATG	CTTGACGTGG
291	1.17e-22	ACTCATGTTT	GACGTGGTAAGTACTCATGTTTGACGTACTAAGCTCTCATG	GTTAGCTATT
44	4.30e-19	TACATGAGAG	TCAATAAAAAAAACTCATGTTTAACGTGGTAGGCGCTCATG	TTTAGTTTCT

Motif GCTCTCG

Start	P-value		Site
476	1.98e-05	GATCCTTGTA	GCTCTCG	TTAGCAGGGT
184	1.98e-05	TACATATCAT	GCTCTCG	ATCTGTTGAT

Motif CACKCCT

Start	P-value		Site
369	1.98e-05	ATACATTACA	CACGCCT	AAGTTTTTAA
133	5.17e-05	ACAAGAAAAT	CACTCCT	ACGAGATATC

The result of BLAST

Download

subject_id	identity	aln_length	q_start	q_end	s_start	s_end	bit_score
pORI00001189	100.0	523	1	523	523	1	966
pORI00001188	100.0	523	1	523	1	523	966
pORI00000729	100.0	523	1	523	1384	862	966
pORI00000566	100.0	373	1	373	373	1	689