DoriC

RefSeq

NC_019083

DoriC accession number

pORI00000546

OriC length

1248 nt

OriC AT content

0.5393

The location of oriC region

33704..6 nt

Browse in NCBI

OriC map

OriC sequences

ATAAAGACAGGTATTGCTTTACCGTGCATAAGGGATTACCAAAAGAGGCGCGAACTGTAGTTACATAATGCGCTGTCGTAACATCGCGCCGGAGACGTTCGCCAGGACTGGCGAACCAACAAGCCCGAATGATAGCGATAACCCCCCTCACCCCTGCCAGGCCAATTTCTGACTATCAGACGACGTTTAGCCTGTCGCAGTTAGCGCGTGAGCTTGCGAACGGTACGCCGGGTCAGTGTGAAACACTGGCGCGGGGCGCTGTATCTGCGCGTTGTGAGATGCGTTAGCAGCGAATTACGGGGCGTGTTGCTGAAACCGATTGATGCCTGACAGCAAAAAATGAATCCGGGCGCTAGCTGCAGAACGACAATTGCCAGCAAAAATCCGGTGGCCATCCTCGCCGGTTGTGAAATTTTGCTGGCATCCTGTGCGAGCGGAGATCACCCCCAGGCTAATTTTTGGCTTGTTTCGTAAAACGAGCTGTATGGCGCTCTAAGCGCTTTTTACCCGTTCCGTTGAATCATGTCCGGGTAAAAGCCGTTAAAACGCCTGTGAGGGCTTCTGATTGCGTTTTAGGATTGGATCGAAAAAGGATCTCCTCTGGATCTTTTCTGAGAGATCACACCGCTCGCCGCAGCCGAACGACAGGGCGAAGCCCGCGAGTGAGCGAGGAAGCGGAATTTCTGTGGGGTTCCAAAGAGCACTTTCGCGCTGTGGTCACATCTGAGCAACTGAAATTCTAGTGCAGTAGCGAGAGCTGTCATGGGTCTATGTTTGAATTTTTAAGAGCTGTTATCCACAACTGCTTTGCATTAAAAGACTTATATTTTCTTTCTTTTCTTTAAAAACTTAAAGACTTAGTGTCGTTATAACTAATTGATAAATAAAAGGAAAAAATGGAAAACATGAGAGGATAGTACGTGAAACATGAGAGCTTGGTACGTTAAGCATGAGAGGATAGTACGTTAAGCATGAGAGCTTAGTACGTTAAGCATGAGAGGATAGTACGTGAAACATGAGAGCTTAGTACGTTGAATCCACAGATCTATCTGAAGATCTTCAGATCTTGTGATCTTCATGAAAATAGTATTTTTTTATTTCGTATTTTTCCCGCGTTGTTCCTCTTTGAGCAGGGTGTGTAGTATCTCAAGGCATCTAAACATGAGTGGATTGTACGTTCACTTCATGAGTAAAAAAATTTGACTCTCATGTTTTGATTGGTAGGATGGAGAAAATAGCGAGGTCACG

AT-rich region

The information of repeat sequences

Motif AARCATGAGAGSWTAGTACGT

Start	P-value		Site
990	4.56e-13	TTAGTACGTT	AAGCATGAGAGGATAGTACGT	GAAACATGAG
946	4.56e-13	TTGGTACGTT	AAGCATGAGAGGATAGTACGT	TAAGCATGAG
902	1.75e-12	AAAAAATGGA	AAACATGAGAGGATAGTACGT	GAAACATGAG
968	2.49e-12	ATAGTACGTT	AAGCATGAGAGCTTAGTACGT	TAAGCATGAG
1012	3.35e-12	ATAGTACGTG	AAACATGAGAGCTTAGTACGT	TGAATCCACA

Motif CCGSAGACSHHCGCCAGGVC

Start	P-value		Site
89	2.67e-10	TAACATCGCG	CCGGAGACGTTCGCCAGGAC	TGGCGAACCA
632	1.35e-09	ACACCGCTCG	CCGCAGCCGAACGACAGGGC	GAAGCCCGCG
144	1.74e-09	AGCGATAACC	CCCCTCACCCCTGCCAGGCC	AATTTCTGAC
434	2.99e-09	TCCTGTGCGA	GCGGAGATCACCCCCAGGCT	AATTTTTGGC

Motif GCVTGKCGCTGTAASCGCKTG

Start	P-value		Site
190	2.10e-10	ACGACGTTTA	GCCTGTCGCAGTTAGCGCGTG	AGCTTGCGAA
302	7.12e-10	GAATTACGGG	GCGTGTTGCTGAAACCGATTG	ATGCCTGACA
483	1.07e-09	AAAACGAGCT	GTATGGCGCTCTAAGCGCTTT	TTACCCGTTC
251	1.07e-09	AAACACTGGC	GCGGGGCGCTGTATCTGCGCG	TTGTGAGATG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000546	100.0	1248	0	0	1	1248	1	1248	0.0	2305
pORI00000546	93.182	88	6	0	946	1033	902	989	7.05e-31	130
pORI00000546	93.182	88	6	0	902	989	946	1033	7.05e-31	130
pORI00000546	95.455	44	2	0	990	1033	902	945	4.34e-13	71
pORI00000546	95.455	44	2	0	902	945	990	1033	4.34e-13	71
pORI00000729	85.142	599	83	6	42	637	165	760	0.0	608
pORI00000874	90.055	362	33	3	372	731	41	401	0.0	466
pORI00000874	98.113	53	1	0	288	340	1	53	9.26e-20	94
pORI00000006	84.242	165	26	0	902	1066	550	714	2.5e-40	161
pORI00000006	91.667	48	3	1	987	1033	524	571	2.02e-11	66