DoriC

RefSeq

NC_019899

DoriC accession number

pORI00000566

OriC length

373 nt

OriC AT content

0.6273

The location of oriC region

47015..47387 nt

Browse in NCBI

OriC map

OriC sequences

GCGTGTGTAATGTATTGATATTGAATAGTAAAAATAGCTAACCATGAGAGCTTAGTACGTCAAACATGAGTACTTACCACGTCAAACATGAGTGCTTACCACGTCAAACATGAGTGCTTACCACGTCAAGCATGAGTACTTACCACGTTAAACATGAGCACTTACCACGTCTAATCAACAGATCGAGAGCATGATATGTAGATCTTTGTTTCTTCGTATAGAAAGATATCTCGTAGGAGTGATTTTCTTGTTTTACGCATCGCCTTTTAGACAGTTTGCAGAAACTAAACATGAGCGCCTACCACGTTAAACATGAGTTTTTTTTATTGACTCTCATGTATAAGGGGTTAGACTGTTTATTATTGAGTCAAAT

AT-rich region

The information of repeat sequences

Motif AAACATGAGYRCTTACCACGT

Start	P-value		Site
106	3.74e-13	TTACCACGTC	AAACATGAGTGCTTACCACGT	CAAGCATGAG
84	3.74e-13	TTACCACGTC	AAACATGAGTGCTTACCACGT	CAAACATGAG
287	4.53e-13	TGCAGAAACT	AAACATGAGCGCCTACCACGT	TAAACATGAG
150	8.13e-13	TTACCACGTT	AAACATGAGCACTTACCACGT	CTAATCAACA
62	1.20e-12	TTAGTACGTC	AAACATGAGTACTTACCACGT	CAAACATGAG

Motif AAVCATGAG

Start	P-value		Site
128	7.29e-06	TTACCACGTC	AAGCATGAG	TACTTACCAC
40	7.29e-06	AAAAATAGCT	AACCATGAG	AGCTTAGTAC
309	1.33e-05	CTACCACGTT	AAACATGAG	TTTTTTTTAT

Motif TATTGA

Start	P-value		Site
361	5.79e-04	GACTGTTTAT	TATTGA	GTCAAAT
325	5.79e-04	GAGTTTTTTT	TATTGA	CTCTCATGTA
19	5.79e-04	AATGTATTGA	TATTGA	ATAGTAAAAA
13	5.79e-04	GTGTGTAATG	TATTGA	TATTGAATAG

The result of BLAST

Download

subject_id	identity	aln_length	q_start	q_end	s_start	s_end	bit_score
pORI00001189	100.0	373	1	373	151	523	689
pORI00001188	100.0	373	1	373	373	1	689
pORI00000729	100.0	373	1	373	1012	1384	689
pORI00000566	100.0	373	1	373	1	373	689