DoriC

RefSeq

NZ_CP017584

DoriC accession number

pORI00000874

OriC length

1350 nt

OriC AT content

0.5985

The location of oriC region

367..1716 nt

Browse in NCBI

OriC map

OriC sequences

CAGCGAATTACGGGGCGTGTTGCTGAAACCGATTGATCCCTGACAGCAAAAAACAATTGGCCATCATCGCCGGTCGTGAAATTTTGCTGGCATTCTGTGCGAGCGGTGATCATCCTAGGCCAATTTTTGGCTTGTTACGTAAAAACGAGCTGTATGACGTTCTAAGCGCATTTTACCCGTTCCGTTGAACCATGACCGGGTAAAAGCCGTTAAAACGCTTCTAGGGGCTTCTGATTGCGTTTTAGGATTGGATCGAAAAAGGATCGCGGCAGGATCTTTTCAGAGAGATCACTCCGCTCGCCGCAGCCGAACGACAGGGCGAAGCCCGCGAGTGAGCGAGGAAGCGGAATTTCTGTAGGGTTCCAATGAGCACTTTCGCGCTGTGGTTAATATTTGAGCAAATGCTGAATCTGTAGTCATACTGTAGGGTATGTAAATTTATCCTCTAGGTTTCTTCTAAGATATCCACCGTTTTTGTGTACACAAATTTTCTCAGGAAGTTATCCACAGATTTCTTGTGATTTTTTGTTTAGAACACTTATTAATCTTTAGATCTTAAATGTAGATCGGAGATCTACTTTAAGATCTTTGATCGCTTTAAACACTTTTGCAAAATATGTGCCAATGTATTTATTTGTTTAAATACAGTATGTTGTATGTGTTTTAAAGTCTACACCTTTCATTAAAGGTGGGTGGATATGCCGCTAAAGGTGGGTAGCTGTGCCGCTAAAGGTGGGTGATTGTGCCGCTAAAGGCGGGTAGCTGTGCCGCTAAAGGTGGGTGATTGTGCCGCTAAAGGTGGGTAGCTGTGCCGTTCAAATTTTACTTCATATCTTCATATAGTTAGATCTTCAGATCTGCATATCTAATTAGTTTATTAAAGTGCTAGTTGGTTAGAAATTAGGCTTTATACAGCGACAATTTTCACTTAACGTCTCAGGAACTGAGTGTTCGATCCATGAAAGGTGGGTAGCTATGCCGTTAGTTCTCATGGTTAACGTACTAACCACTCATGTTTTGTAAAATGATGATATAAAACAGGTTGTTATGTTTATTTATGCTCGTTTGTTGTGCTGGATACATAGCTTTTTCATACATACAGGAGGGAAGCTATGCCGTCGAATTGGAGATAGATTGATGAGGAATATATGGGAATGCCAATAGTGCTCATGATCTCTATTGCTGTAGCTCTTTTTTCACGTACTAACCTCTCATGTTTATTTTTATTTTTGTTGTAACTTATTGATATATATATTATTAAAGGTTAGTTTGTGAAAGGTTAGTGATACCTCTTTTGCAAACCCTCTTTTGTGTGTATTGTATCCCTTAGATTTTACAAGGGAGGTACAA

AT-rich region

The information of repeat sequences

Motif AARSTGRGTGDTTGTGCCGCTAAAGGTGGGTAGCTRTGCCG

Start	P-value		Site
774	1.27e-25	TGTGCCGCTA	AAGGTGGGTGATTGTGCCGCTAAAGGTGGGTAGCTGTGCCG	TTCAAATTTT
730	6.43e-25	TGTGCCGCTA	AAGGTGGGTGATTGTGCCGCTAAAGGCGGGTAGCTGTGCCG	CTAAAGGTGG
686	4.25e-22	CCTTTCATTA	AAGGTGGGTGGATATGCCGCTAAAGGTGGGTAGCTGTGCCG	CTAAAGGTGG
941	2.82e-18	AACGTCTCAG	GAACTGAGTGTTCGATCCATGAAAGGTGGGTAGCTATGCCG	TTAGTTCTCA
1078	1.35e-15	GTTGTGCTGG	ATACATAGCTTTTTCATACATACAGGAGGGAAGCTATGCCG	TCGAATTGGA

Motif ACGTWCTAASCDC

Start	P-value		Site
998	8.41e-09	CTCATGGTTA	ACGTACTAACCAC	TCATGTTTTG
1199	1.43e-08	CTCTTTTTTC	ACGTACTAACCTC	TCATGTTTAT
157	5.93e-08	GAGCTGTATG	ACGTTCTAAGCGC	ATTTTACCCG

Motif CSCKYKCCGYWGMMSMAYGACMGGGYRAARSCCG

Start	P-value		Site
295	2.85e-20	GAGATCACTC	CGCTCGCCGCAGCCGAACGACAGGGCGAAGCCCG	CGAGTGAGCG
176	3.62e-18	GCGCATTTTA	CCCGTTCCGTTGAACCATGACCGGGTAAAAGCCG	TTAAAACGCT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000874	100.0	1350	0	0	1	1350	1	1350	0.0	2494
pORI00000874	94.253	87	5	0	728	814	684	770	5.91e-32	134
pORI00000874	94.253	87	5	0	684	770	728	814	5.91e-32	134
pORI00000546	90.055	362	33	3	41	401	372	731	0.0	466
pORI00000546	98.113	53	1	0	1	53	288	340	1e-19	94
pORI00000729	96.226	53	2	0	1	53	411	463	4.66e-18	88