DoriC

RefSeq

NZ_CP029439

DoriC accession number

pORI00001189

OriC length

523 nt

OriC AT content

0.631

The location of oriC region

10254..10776 nt

Browse in NCBI

OriC map

OriC sequences

AATGGCTAAAATATGAACATCTTGCGAGTATACCCTGCTAACGAGAGCTACAAGGATCTATCCTCTAGGTTTATGCCGGTTTATCCACAGGCACTGTGCATTAAAAGACTTCTCTTTTCTTTTCTTTTCTTTAAAAACTTAAAAACTTAGGCGTGTGTAATGTATTGATATTGAATAGTAAAAATAGCTAACCATGAGAGCTTAGTACGTCAAACATGAGTACTTACCACGTCAAACATGAGTGCTTACCACGTCAAACATGAGTGCTTACCACGTCAAGCATGAGTACTTACCACGTTAAACATGAGCACTTACCACGTCTAATCAACAGATCGAGAGCATGATATGTAGATCTTTGTTTCTTCGTATAGAAAGATATCTCGTAGGAGTGATTTTCTTGTTTTACGCATCGCCTTTTAGACAGTTTGCAGAAACTAAACATGAGCGCCTACCACGTTAAACATGAGTTTTTTTTATTGACTCTCATGTATAAGGGGTTAGACTGTTTATTATTGAGTCAAAT

AT-rich region

The information of repeat sequences

Motif AAACATGAGYRCTTACCACGT

Start	P-value		Site
256	3.73e-13	TTACCACGTC	AAACATGAGTGCTTACCACGT	CAAGCATGAG
234	3.73e-13	TTACCACGTC	AAACATGAGTGCTTACCACGT	CAAACATGAG
437	4.54e-13	TGCAGAAACT	AAACATGAGCGCCTACCACGT	TAAACATGAG
300	6.90e-13	TTACCACGTT	AAACATGAGCACTTACCACGT	CTAATCAACA
212	1.23e-12	TTAGTACGTC	AAACATGAGTACTTACCACGT	CAAACATGAG

Motif GAGAGC

Start	P-value		Site
335	1.04e-04	TCAACAGATC	GAGAGC	ATGATATGTA
196	1.04e-04	AGCTAACCAT	GAGAGC	TTAGTACGTC
43	1.04e-04	CCCTGCTAAC	GAGAGC	TACAAGGATC

Motif AGGMGTG

Start	P-value		Site
149	1.98e-05	TTAAAAACTT	AGGCGTG	TGTAATGTAT
385	5.17e-05	GATATCTCGT	AGGAGTG	ATTTTCTTGT

The result of BLAST

Download

subject_id	identity	aln_length	q_start	q_end	s_start	s_end	bit_score
pORI00001189	100.0	523	1	523	1	523	966
pORI00001188	100.0	523	1	523	523	1	966
pORI00000729	100.0	523	1	523	862	1384	966
pORI00000566	100.0	373	151	523	1	373	689