DoriC

RefSeq

NC_022076

DoriC accession number

pORI00000296

OriC length

313 nt

OriC AT content

0.6805

The location of oriC region

3308..3620 nt

Browse in NCBI

OriC map

OriC sequences

TATAAAAAAGACCTGTTAAGGGTCTTTTTTGGGTGAATTTTGAACGAAGTGAAAAAAAGAGGGCTGGGAAGCCCTTAGAAACCCTCGAAGAGGGTTTCTTCTTATCTTGATACTTTTAGAAATAACTCTCATGCTAAAAAGAGTCTCTCTACCATAATTAAACCCTTGGTATTATTGGATTTTTAGCACAAAAAAAAGCTTGATTCTCAGTCAAAACTTTGATATGATTTAGTCACCACAACAAAAACATAGAAAGAGAGATGAGTACAAACTTTTTTTGTGAATTAATTCTTTTTTGTACTCCAATTATAAC

AT-rich region

The information of repeat sequences

Motif GKHTNKKWASCACAAWWAAAMCCTWG

Start	P-value		Site
62	7.11e-12	AAAAAAAGAG	GGCTGGGAAGCCCTTAGAAACCCTCG	AAGAGGGTTT
143	2.78e-11	GCTAAAAAGA	GTCTCTCTACCATAATTAAACCCTTG	GTATTATTGG
177	5.54e-11	TGGTATTATT	GGATTTTTAGCACAAAAAAAAGCTTG	ATTCTCAGTC
227	8.92e-10	CTTTGATATG	ATTTAGTCACCACAACAAAAACATAG	AAAGAGAGAT

Motif TCTTTTTTG

Start	P-value		Site
290	9.91e-06	GTGAATTAAT	TCTTTTTTG	TACTCCAATT
23	9.91e-06	CTGTTAAGGG	TCTTTTTTG	GGTGAATTTT

Motif TCTCAKKC

Start	P-value		Site
205	1.89e-05	AAAGCTTGAT	TCTCAGTC	AAAACTTTGA
127	1.89e-05	TAGAAATAAC	TCTCATGC	TAAAAAGAGT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000296	100.0	313	0	0	1	313	1	313	0.0	579
pORI00000084	94.048	84	3	1	1	84	1	82	2.19e-30	126
pORI00000001	92.727	55	3	1	75	128	38	92	6.22e-16	79