DoriC

RefSeq

NC_019382.1

Accession number

NC_019382.1

DoriC accession number

ORI96000442

OriC length

1789 nt

OriC AT content

0.434321

The location of oriC region

3679529..3681317 nt

Browse in NCBI

OriC map

OriC sequences

gidAGATGGGGAGAGATGAAAGAGCGTTCCGAGGCCATTATAGTGGCACCTCGCTGGGCGTTTCACGTGAAACATCGTAAGCCCTGTAATCCGTACGATCTATGCGGCTTATGCGCCACGGCCTCTGCTCAAAATGCCAGGCCTAGCAATGTTTCACGTGAAACATGCGGCGCCTGTTCCGACCCTCAATAATGCGATTACATGTTCCACGTGAAACAATACTCCTTGATTCGGCATTGAGGCAGACTCACTCAAGCCGTCAGCATGATGTTTCACGTGAAACAACGGCAGCATGAGCTGTCTGCCACGGGGTTCCGGGCAGCCAAAAACAACGATGTTTTTACCCCTACCCTACCCCTAGGCCAAAACAAGCGCAGTTTTGTCGTCAAACGACCATGTCGGAATGACCAGAAGCAAGCCGGCTTTCCCGGCTGCCGCGATTTGGATAATCCCGATCAGGCAAGTACCGCACTCCTCCGTACACTGCGCTCGCCAACGCCTATCCCTTCTCCGCTACACGCGCACGGCCGGCTACGCCCAACATTCGATCTCCAGGCTCGATCCGCATCCCGTTTCGTGCGCCGGCAGAATGTCCGGGCTGCGCGGGCCCCGCGCACAGGACAAGATCTCGAAACGCATGGCCAATGGGATGGCTCGTCCAGGAAATCTCGCGGGCGTCGGCAACACACCGCATGCCCGTTGCTGGGCTCAAGGATTTCTCCGACTTGCGGAATGTCCTGGACTCGTTGAGCCGGCGGCCCGGCAAATCCGATATACGCGCAAGCAGCATGCCCACCGCGAAGCATGTAATCAAAGCAGGTGGCCACGGGCCATGGATCGAATGGCAATTTTCGTTTCACGTGAAACATCGCGACTCAATACTGCCAACACCGGGGAACAGAAATATAAGACCGGTGTCTCGTTCTGGTCCGTCGAGCCGCATCGATCACGCAGGGAAAACGCTACCATCCAACGGCTTAATACTTTCGGCTAGGACCCGCCTGAGACTGGCAACACCAAGGCAACATTCATACGTGGACGCGGAAATTTGTGCGGTCTGCATCACCATCTTATCCACCGCCCCCTGTGGACAACCCAATCGCCCGGCGGGACATCGGGATACGCGTGCCGTTGCCGCATCAATGCCCTCCGTCGAATCCGCCCGTGTTGGTTGATGACCGACTCGAGACTGGCGTCGATGCCGGCACTGGCGAAGAACAACCATGGCGCCGGCACACAATCGTGCTGAATTGGGGATCAATCCCCAGAAGTATCCACAGATTTTTCGATCAGGAATCCTCCTGGAATATGTCTCGATATGGGCAAGAAAATTGGGGATATCTTTGTGAACAAATCGGGCCCGACCCGTAATGGAGGTGGGCCCGAGGTCGCCAAACCGTGACGTCCGGATCTGCGCCGGAAACCCCAGCATGCATATCTGATCGCGTAACACCGTGGATTTACAGGAGATTTTCCCTGGCAAGCGTAGATCAACGAAAGAAGCTGCCCGGGGAGACTCGCACCATCGTCCCACCCGTGGCGCGAAATAACGATGTCATCCGCTGTGTAAAACTCCAGCACCATGTCCGGCGTCGGCGCGTGCAAACCTGTCCGACCCAGGTGCCGGGCGGAGGCTTATCCACAAAGTTATCCAAGCCCGTAGTGATGTTAGTAAGCACTAACTGCATGCCGTGCGGCGACGGCAAAAGCAACAACGCCCCAGAAGCTATGTTCCTGGGGCGTTGTAACCAGGCACTTGGGCCTGGTATGCGGGAAAAACGGGATTTCCCGAT-

gidaGATGGGGAGAGATGAAAGAGCGTTCCGAGGCCATTATAGTGGCACCTCGCTGGGCGTTTCACGTGAAACATCGTAAGCCCTGTAATCCGTACGATCTATGCGGCTTATGCGCCACGGCCTCTGCTCAAAATGCCAGGCCTAGCAATGTTTCACGTGAAACATGCGGCGCCTGTTCCGACCCTCAATAATGCGATTACATGTTCCACGTGAAACAATACTCCTTGATTCGGCATTGAGGCAGACTCACTCAAGCCGTCAGCATGATGTTTCACGTGAAACAACGGCAGCATGAGCTGTCTGCCACGGGGTTCCGGGCAGCCAAAAACAACGATGTTTTTACCCCTACCCTACCCCTAGGCCAAAACAAGCGCAGTTTTGTCGTCAAACGACCATGTCGGAATGACCAGAAGCAAGCCGGCTTTCCCGGCTGCCGCGATTTGGATAATCCCGATCAGGCAAGTACCGCACTCCTCCGTACACTGCGCTCGCCAACGCCTATCCCTTCTCCGCTACACGCGCACGGCCGGCTACGCCCAACATTCGATCTCCAGGCTCGATCCGCATCCCGTTTCGTGCGCCGGCAGAATGTCCGGGCTGCGCGGGCCCCGCGCACAGGACAAGATCTCGAAACGCATGGCCAATGGGATGGCTCGTCCAGGAAATCTCGCGGGCGTCGGCAACACACCGCATGCCCGTTGCTGGGCTCAAGGATTTCTCCGACTTGCGGAATGTCCTGGACTCGTTGAGCCGGCGGCCCGGCAAATCCGATATACGCGCAAGCAGCATGCCCACCGCGAAGCATGTAATCAAAGCAGGTGGCCACGGGCCATGGATCGAATGGCAATTTTCGTTTCACGTGAAACATCGCGACTCAATACTGCCAACACCGGGGAACAGAAATATAAGACCGGTGTCTCGTTCTGGTCCGTCGAGCCGCATCGATCACGCAGGGAAAACGCTACCATCCAACGGCTTAATACTTTCGGCTAGGACCCGCCTGAGACTGGCAACACCAAGGCAACATTCATACGTGGACGCGGAAATTTGTGCGGTCTGCATCACCATCTTATCCACCGCCCCCTGTGGACAACCCAATCGCCCGGCGGGACATCGGGATACGCGTGCCGTTGCCGCATCAATGCCCTCCGTCGAATCCGCCCGTGTTGGTTGATGACCGACTCGAGACTGGCGTCGATGCCGGCACTGGCGAAGAACAACCATGGCGCCGGCACACAATCGTGCTGAATTGGGGATCAATCCCCAGAAGTATCCACAGATTTTTCGATCAGGAATCCTCCTGGAATATGTCTCGATATGGGCAAGAAAATTGGGGATATCTTTGTGAACAAATCGGGCCCGACCCGTAATGGAGGTGGGCCCGAGGTCGCCAAACCGTGACGTCCGGATCTGCGCCGGAAACCCCAGCATGCATATCTGATCGCGTAACACCGTGGATTTACAGGAGATTTTCCCTGGCAAGCGTAGATCAACGAAAGAAGCTGCCCGGGGAGACTCGCACCATCGTCCCACCCGTGGCGCGAAATAACGATGTCATCCGCTGTGTAAAACTCCAGCACCATGTCCGGCGTCGGCGCGTGCAAACCTGTCCGACCCAGGTGCCGGGCGGAGGCTTATCCACAAAGTTATCCAAGCCCGTAGTGATGTTAGTAAGCACTAACTGCATGCCGTGCGGCGACGGCAAAAGCAACAACGCCCCAGAAGCTATGTTCCTGGGGCGTTGTAACCAGGCACTTGGGCCTGGTATGCGGGAAAAACGGGATTTCCCGAT-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif YGTTTCACGTGAAACAW

Start	P-value		Site
146	2.18e-11	GGCCTAGCAA	TGTTTCACGTGAAACAT	GCGGCGCCTG
265	4.82e-11	GTCAGCATGA	TGTTTCACGTGAAACAA	CGGCAGCATG
849	8.15e-11	TGGCAATTTT	CGTTTCACGTGAAACAT	CGCGACTCAA
55	8.15e-11	CCTCGCTGGG	CGTTTCACGTGAAACAT	CGTAAGCCCT
199	1.96e-10	TGCGATTACA	TGTTCCACGTGAAACAA	TACTCCTTGA

Motif TGGCGHVAAACAACSATGTC

Start	P-value		Site
1534	1.52e-10	GTCCCACCCG	TGGCGCGAAATAACGATGTC	ATCCGCTGTG
1205	2.59e-10	ATGCCGGCAC	TGGCGAAGAACAACCATGGC	GCCGGCACAC
377	6.67e-10	AGCGCAGTTT	TGTCGTCAAACGACCATGTC	GGAATGACCA
316	1.59e-09	GGGTTCCGGG	CAGCCAAAAACAACGATGTT	TTTACCCCTA

Motif GATGTCTCGWTCWGG

Start	P-value		Site
910	1.02e-08	ATATAAGACC	GGTGTCTCGTTCTGG	TCCGTCGAGC
1304	2.40e-08	CCTCCTGGAA	TATGTCTCGATATGG	GCAAGAAAAT
1276	5.79e-08	AGTATCCACA	GATTTTTCGATCAGG	AATCCTCCTG
645	2.74e-07	TGGCCAATGG	GATGGCTCGTCCAGG	AAATCTCGCG
427	6.64e-07	GGCTTTCCCG	GCTGCCGCGATTTGG	ATAATCCCGA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96000442	100.0	1789	0	0	1	1789	1	1789	3304
ORI10020006	97.599	1791	41	2	1	1789	1791	1	3068
ORI10020007	97.543	1791	42	2	1	1789	1791	1	3062
ORI96000440	97.432	1791	44	2	1	1789	1791	1	3051
ORI96000441	94.252	1792	99	4	1	1789	1791	1	2736
ORI96000380	97.448	1528	36	3	264	1789	1527	1	2603
ORI96000380	97.209	215	6	0	1	215	1724	1510	364
ORI10030012	97.448	1528	36	3	264	1789	1527	1	2603
ORI10030012	97.209	215	6	0	1	215	1724	1510	364
ORI96000433	97.382	1528	37	3	264	1789	1527	1	2597
ORI96000433	97.209	215	6	0	1	215	1724	1510	364