DoriC

RefSeq

NC_002927.3

Accession number

NC_002927.3

DoriC accession number

ORI10020006

OriC length

1791 nt

OriC AT content

0.430486

The location of oriC region

5337389..5339179 nt

Browse in NCBI

OriC map

OriC sequences

-ATCGGGAAATCCCGTTTTTCCCGCATACCAGGCCCAAGTGCCTGGTTACAACGCCCCAGGAACATAGCTTCTGGGGCGTTGTTGCTTTTGCCATCGCCGCACGGCATACAGTTAGTGCTTACTAACATCACTACGGGCTTGGATAACTTTGTGGATAAGCCTCCACCCGGCACCTGGGTCGGACAGGTTTGCGCGCGCCGACGCCGGACATGGTGCTGGAGTTTTACACAGCGGATGACATCGTTATTTCGCGCCACGGGTGGGACGATGGTGCGAGTCGCCCCGGGCAGCTTCTTTCGTTGATCTATGCTTGCCAGGGAAAATCTCCTGTAAATCCACGGTGTTACGCGATCAGATATGCATGCTGGGGTTTCCGGCGCAGATCCGGACGTCACGGTTTGGCGACCTCGGGCCCACCTCCATTACGGGTCGGGCCCGATTTGTTCACAAAGATATCCCCAATTTTCTTGCCTGTATCGAGACATATTCCAGGAGGATTCCTGATCGAAAAATCTGTGGATACTTCTGGGGATTGATCCCCAATTCAGCACGGTTGTGTACCGGCGCCATGGTTGTTCTTCGCCAGTGCCGGCATCGACGCCAGTCTCGAGTCGGTCATCAACCAACACGGGCGGATTCGACGGAGGGCATTGATGCGGCAACGGCACGCGTATCCCGATGCCCCGCCGGGCGATCGGGTTGTCCACAGGGGGCGGTGGATAAGATGGTGATGCAGGCCGCACAAATTTCCGCGTCCACGTATGAATGTTGCCTTGGTGTTGCCAGTCTCAGGCGGGTCCTAGCCGAAAGTATTAAGCCGTTGGATGGTAGCGTTTTCCCTGCGTGATCGATGCGGCTCGACGGACCTGAACGAGACACCGGTCTTATATTTCTGCTCCTCGGTGTTGGCAGTATTGAGTCGCGATGTTTCACGTGAAACGAAAATTGCCATTCGATGCCATGGCCCGTGGCCACCTGCTTTGATTACATGCTTCGTGGTGGGCATGCCGCTTGCGCGTATATCGGATTTGCCCGGCCCCCCGCTCAACGAGTCCAGGACATTCCGCAAGTCGGAGAAATCCTTGAGCCCAGCAACGGGCATGCGGCGTGTTGACGACGCCCGCGAGATTTCCTGGACGAGCCATCCCATTGGCCCTGCGTTTCGAGATCTTGTCCCGTGCGCGGGGGGCCGCGCAGCCCGGGCATTCTGCCGGCACACGAAACGGGATGCGGATCGAGCCTGGAGATCGAATGTTGGGCGTAGCCGGCCGTGCGCGTGTAGCGGAGAAGGGACAGGCGTTGGCGAGCGCAGTGTACGGAGGAGTGTGGTACTTGCCTGATCGGGATTATCCAAATCGCGGCAGCCGGGAAAGCCGGCTTGCTTCTGGTCATTCCGCCATGGTCGTTTGACGACAAAACTGCGCTTGTTTTGGCCTAGGGGTAGGGTAGGGGTAAGAACATCGTTGTTTTTGGCTGCCCGGAACCGCGTGGAAGACAGCTCATGCTGCCGTTGTTTCACGTGAAACATCATGCTGACGGCTTGAGTGAGTCTGCCTCAATGCCGAATCAAGGAGTGTTGTTTCACGTGGAACATGTAGTCGCATTATTGAGGGTCGGAACAGGCGCCGCATGTTTCACGTGAAACATTGCTAGGCCTGGCGTTTTGGACAGAGGCCGTGGCGCATAAGCCGCATAGATCGTACGGATTACAGGGCTTACGATGTTTCACGTGAAACGCCGAACGAGGTGCCACTATAATGGCCTCGGAACGCTCTTTCATCTCTCCCCATCgidA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GWTGTTTCACGTGAAACR

Start	P-value		Site
1510	1.40e-11	TCATGCTGCC	GTTGTTTCACGTGAAACA	TCATGCTGAC
1720	2.39e-11	CAGGGCTTAC	GATGTTTCACGTGAAACG	CCGAACGAGG
924	2.39e-11	ATTGAGTCGC	GATGTTTCACGTGAAACG	AAAATTGCCA
1629	2.95e-11	ACAGGCGCCG	CATGTTTCACGTGAAACA	TTGCTAGGCC
1576	7.89e-11	ATCAAGGAGT	GTTGTTTCACGTGGAACA	TGTAGTCGCA

Motif RMCATBGTYRTTYBDCGCCA

Start	P-value		Site
566	3.31e-10	GTGTACCGGC	GCCATGGTTGTTCTTCGCCA	GTGCCGGCAT
237	5.87e-10	CACAGCGGAT	GACATCGTTATTTCGCGCCA	CGGGTGGGAC
1396	1.98e-09	TGGTCATTCC	GCCATGGTCGTTTGACGACA	AAACTGCGCT
1457	1.23e-08	TAGGGGTAAG	AACATCGTTGTTTTTGGCTG	CCCGGAACCG
942	2.35e-08	ACGTGAAACG	AAAATTGCCATTCGATGCCA	TGGCCCGTGG

Motif AWAAMTYTGTGGATA

Start	P-value		Site
508	4.57e-10	TTCCTGATCG	AAAAATCTGTGGATA	CTTCTGGGGA
143	2.00e-09	ACGGGCTTGG	ATAACTTTGTGGATA	AGCCTCCACC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI10020006	100.0	1791	0	0	1	1791	1	1791	3308
ORI10020007	97.934	1791	37	0	1	1791	1	1791	3103
ORI96000440	97.822	1791	39	0	1	1791	1	1791	3092
ORI96000442	97.599	1791	41	2	1	1791	1789	1	3068
ORI96000441	94.81	1792	91	2	1	1791	1	1791	2793
ORI96000380	98.626	1528	20	1	1	1528	1	1527	2704
ORI96000380	99.074	216	2	0	1576	1791	1509	1724	388
ORI10030012	98.626	1528	20	1	1	1528	1	1527	2704
ORI10030012	99.074	216	2	0	1576	1791	1509	1724	388
ORI96000433	98.56	1528	21	1	1	1528	1	1527	2699
ORI96000433	99.074	216	2	0	1576	1791	1509	1724	388