DoriC

RefSeq

NC_002928.3

Accession number

NC_002928.3

DoriC accession number

ORI10020007

OriC length

1791 nt

OriC AT content

0.432719

The location of oriC region

4771761..4773551 nt

Browse in NCBI

OriC map

OriC sequences

-ATCGGGAAATCCCGTTTTTCCCGCATACCAGGCCCAAGTGCCTGGTTACAACGCCCCAGGAACATAGCTTCTGGGGCGTTGTTGCTTCTGCCATCGCCGCACGGCATACAGTTAGTGCTTACTAACATCACTACGGGCTTGGATAACTTTGTGGATAAGCCTCCACCCGGCACCTGGGTCGGACAGGTTTGCGCGCGCCGACGCCGGACATGGTGCTGGAGTTTTACACAGCGAATGACATCGTTATTTCGCGCCACGGGTGGGACGATGGTGCGAGTCGCCCCGGGCAGCTTCTTTCGTTGATCTACGCTTGCCAGGGAAAATCTCCTGTAAATCCACGGTGTTACGCGATCAGATATGCATGCTGGGGTTTCCGGCGCAGATCCGGACGTCACGGTTTGGCGACCTCGGGCCCACCTCCATTACGGGTCGGGCCCGATTTGTTCACAAAGATATCCCCAATTTTCTTGCCCGTATCGAGACATATTCCAGGAGGATTCCTGATCGAAAAATCTGTGGATACTTCTGGGGATTGATCCCCAATTCAGCACGGTTGTGTACCGGCGCCATGGTTGTTCTTCGCCAGTGCCGGCATCGACGCCAGTCTCGAGGCGGTCATCAACCAACACGGGCGGATTCGACGGAGGGCATTGATGCGGCAACGGCACGCGTATCCCGATGTCCCGCCGGGCGATCGGGTTGTCCACAGGGGGCGGTGGATAAGATGGTGATGCAGACCGCACAAATTTCCGCGTCCACGTATGAATGTTGCCTTGGTGTTGCCAGTCTCAGGCGGGTCCTAGCCGAAAGTATTAAGCCGTTGGATGGTAACGTTTTCCCTGCGTGATCGATGCGGCTCGACGGACCAGAACGAGACACCGGTCTTATATTTCGGCTTCCCGGTGCTGGCAGTATTGAGTCGCGATGTTTCACGTGAAACGAAAATTGCCATTCGATGCCATGGCCCGTAGCCACCTGCTTTGATTACATGCTTCGTGGTGGGCATGCCGCTTGCGCGTATATCGGATTTGCCGGGCCGCCCGCTCAACGAGTCCAGGACATTCCGCAAGTCGGAGAAATCCTTGAGCCCAGCAACGGGCATGCGGCGTGTTGACGACGCCCGCGAGATTTCCTGGACGAGCCATCCCATTGGCCCTGCGTTTCGAGATCTTGTCCCGTGCGCGGGGGCCCGCGCAGCCCGGATATTCTGCCGGCACACGAAACGGGATGCGGATCGAGCCTGGAGATCGAATGTTGGGCGTAGCCGGCCGTGCGCGTGCAGCGGAGAAGGGACAGGCGTTGGCGAGCGCAGTGTACGGAGGAGTGCGGTACTGACCTGATCGGGATTATCCAAATCGTGGCAGCCGGGAAAGCCGGCTTGCTTCTGATCATTCCGACATGGTCGTTTGACGACAAAACTGCGCTTGTTTTGGCCTAGGGGTAGGGTAGGGGTAAAAACTTCGTTGTTTTTGGCTGCCCGGAACCGCGTGGCAGACAGTTCATGTTGCCGTTGTTTCACGTGAAACATCACGCTGACGGCTTGAGTGAGTCTGCCTCAATGCCGAATCAAGGAGTATTGTTTCACGTGGAACATGTAATCGCATTATTGAGGGTCGGAACAGGCGCCGCATGTTTCACGTGAAACATTGCTAGGCCTGGCGTTTTGGGCAGAGGCCGTGGCGCATAAGCCGCATAGATCGTACGGATTACAGGGCTTACGATGTTTCACGTGAAACGCCCAACGAGGTGCCACTATAATGGCCACGGAACGCTCTTTCATCTCTCCCCATCgidA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif WTGTTTCACGTGAAACR

Start	P-value		Site
1630	2.19e-11	CAGGCGCCGC	ATGTTTCACGTGAAACA	TTGCTAGGCC
1511	4.76e-11	CATGTTGCCG	TTGTTTCACGTGAAACA	TCACGCTGAC
1721	8.06e-11	AGGGCTTACG	ATGTTTCACGTGAAACG	CCCAACGAGG
925	8.06e-11	TTGAGTCGCG	ATGTTTCACGTGAAACG	AAAATTGCCA
1577	1.91e-10	TCAAGGAGTA	TTGTTTCACGTGGAACA	TGTAATCGCA

Motif GACRDVKTSCDBGAGDHTTCCTSADCGAVNVATC

Start	P-value		Site
481	2.51e-16	CCCGTATCGA	GACATATTCCAGGAGGATTCCTGATCGAAAAATC	TGTGGATACT
1113	2.11e-13	GCGGCGTGTT	GACGACGCCCGCGAGATTTCCTGGACGAGCCATC	CCATTGGCCC
207	2.44e-13	GCCGACGCCG	GACATGGTGCTGGAGTTTTACACAGCGAATGACA	TCGTTATTTC
1535	5.32e-13	ACATCACGCT	GACGGCTTGAGTGAGTCTGCCTCAATGCCGAATC	AAGGAGTATT

Motif AAARCTGCSTTGBTTTTG

Start	P-value		Site
1455	3.95e-10	GGTAGGGGTA	AAAACTTCGTTGTTTTTG	GCTGCCCGGA
1415	1.42e-09	GTTTGACGAC	AAAACTGCGCTTGTTTTG	GCCTAGGGGT
765	1.15e-08	TCCACGTATG	AATGTTGCCTTGGTGTTG	CCAGTCTCAG
1370	2.09e-08	GGCAGCCGGG	AAAGCCGGCTTGCTTCTG	ATCATTCCGA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI10020007	100.0	1791	0	0	1	1791	1	1791	3308
ORI96000440	99.553	1791	8	0	1	1791	1	1791	3264
ORI10020006	97.934	1791	37	0	1	1791	1	1791	3103
ORI96000442	97.543	1791	42	2	1	1791	1789	1	3062
ORI96000441	94.587	1792	95	2	1	1791	1	1791	2771
ORI96000380	97.382	1528	39	1	1	1528	1	1527	2599
ORI96000380	98.14	215	4	0	1577	1791	1510	1724	375
ORI10030012	97.382	1528	39	1	1	1528	1	1527	2599
ORI10030012	98.14	215	4	0	1577	1791	1510	1724	375
ORI96000433	97.317	1528	40	1	1	1528	1	1527	2593
ORI96000433	98.14	215	4	0	1577	1791	1510	1724	375