DoriC

RefSeq

NC_018518.1

Accession number

NC_018518.1

DoriC accession number

ORI96000433

OriC length

1724 nt

OriC AT content

0.429234

The location of oriC region

4042123..4043846 nt

Browse in NCBI

OriC map

OriC sequences

-ATCGGGAAATCCCGTTTTTCCCGCATACCAGGCCCAAGTGCCTGGTTACAACGCCCCAGGAACATAGCTTCTGGGGCGTTGTTGCTTTTGCCATCGCCGCACGGCATGCAGTTAGTGTTTACTAACATCACTACGGGCTTGGATAACTTTGTGGATAAGCCTCCGCCCGGCACCTGGGTCGGACAGGCTTGCGCGCGCCGACGCCGGACATGGTGCTGGAGTTTTACACAGCGGATGACATCGTTATTTCGCGCCACGGGTGGGACGATGGTGCGAGTCGCCCCGGGCAGCTTCTTTCGTTGATCTACGCTTGCCAGGGAAAATCTCCTGTAAATCCACGGTGTTACGCGATCAGATATGCATGCTGGGGTTTCCGGCGCAGCTCCGGACGTCACGGTTTGGCGACTTCGGGCCCACCTCCATTACGGGTCGGGCCCGATTTGTTCACAAAGATATCCCCAATTTTCTTGCCTGTATCGAGACATATTCCAGGAGGATTCCTGATCGAAAAATTTGTGGATACTTCTGGGGATTGATCCCCAATTCAGCACGGTTGTGTACCGGCGCCATGGTTGTTCTTCGCCAGTGCCGGCATCGACGCCAGTCTCGAGTCGGTCATCAACCAACACGGGTGGATTCGACGGAGGGCATTGATGCGGCAACGGCACGCGTATCCCGATGCCCCGCCGGGCGATCGGGTTGTCCACAGGGGGCGGTGGATAAGATGGTGATGCAGGCCGCACAAATTTCCGCGTCCACGTATGAATGTTGCCTTGGTGTTACCAGTCTCAGGCGGGTCCTAGCCGAAAGTATTAAGCCGTTGGATGGTAGCGTTTTCCCTGCGTGATCGATGCGGCTCGACGGACCTGAACGAGACACCGGTCTTATATTTCTGCTCCTCGGTGTTGGCAGTATTGAGTCGCGATGTTTCACGTGAAACGAAAATTGCCATTCGATGCCATGGCCCGTGACCACCTGCTTTGATTACATGCTTCGTGGTGGGCATGCCGCTTGCGCTATATCGGATTTGTCCGGCCCCCCGCTCAACGAGTCCAGGACATTCCGCAAGTCGGAGAAATCCTTGAGCCCAGCAACGGGCATGCGGCGTGTTGACGACGCCCGCGAGATTTCCTGGACGAGCCATCCCATTGGCCCTGCGTTTCGAGATCTTGTCCCGTGCGCGGGGGCCCGCGCAGTCCGGACATTCTGCCGGCACACGAAACGGGATGCGGATCGAGCCTGGAGATCGAATGTTGGGCGTAGCCGGCCGTGCGCGTGTAGCGGAGAAGGGACAGGCGTTGGCGAGCGCAGTGTACGGAGGAGTGCGGTACTTGCCTGATCGGGATCATCCAAATCGCGGCAGCCGGGAAAGCCGGCTTGCTTCTGGTCATTCCGCCATGGCCGTTTGACGACAAAACTGCGCTTGTTTTGGCCTAGGGGTAGGGTAGGGGTAAAAACATCGTTGTTTTTGGCTGCCCGGAACCCCGTGGCAGACAGCTCATGCTGCCGTTGTTTCACGTGAAACATGTAATCGCATTATTGAGGGTCGGAACAGGCGCCGCATGTTTCACGTGAAACATTGCTAGGCCTGGCGTTTTGGACAGAGGCCGTGGCGCATAAGCCGCATAGATCGTACGGATTACAGGGCTTACGATGTTTCACGTGAAACGCCGAACGAGGTGCCACTATAATGGCCTCGGAACGCTCTTTCATCTCTCCCCATCgidA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif ATGTTTCACGTGAAAC

Start	P-value		Site
1654	1.04e-10	AGGGCTTACG	ATGTTTCACGTGAAAC	GCCGAACGAG
1563	1.04e-10	CAGGCGCCGC	ATGTTTCACGTGAAAC	ATTGCTAGGC
925	1.04e-10	TTGAGTCGCG	ATGTTTCACGTGAAAC	GAAAATTGCC
1510	2.32e-10	CATGCTGCCG	TTGTTTCACGTGAAAC	ATGTAATCGC

Motif CHGGWCATKCYGC

Start	P-value		Site
1198	3.25e-08	CCCGCGCAGT	CCGGACATTCTGC	CGGCACACGA
1054	6.46e-08	TCAACGAGTC	CAGGACATTCCGC	AAGTCGGAGA
1384	5.28e-07	CGGCTTGCTT	CTGGTCATTCCGC	CATGGCCGTT
204	8.56e-07	CGCGCCGACG	CCGGACATGGTGC	TGGAGTTTTA
1495	8.93e-07	CCGTGGCAGA	CAGCTCATGCTGC	CGTTGTTTCA

Motif AWAACWTYGTKGWTW

Start	P-value		Site
1454	8.50e-09	GGTAGGGGTA	AAAACATCGTTGTTT	TTGGCTGCCC
143	1.21e-08	ACGGGCTTGG	ATAACTTTGTGGATA	AGCCTCCGCC
508	3.04e-08	TTCCTGATCG	AAAAATTTGTGGATA	CTTCTGGGGA
235	1.17e-07	TACACAGCGG	ATGACATCGTTATTT	CGCGCCACGG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96000433	100.0	1724	0	0	1	1724	1	1724	3184
ORI96000380	99.942	1724	1	0	1	1724	1	1724	3179
ORI10030012	99.942	1724	1	0	1	1724	1	1724	3179
ORI10020006	98.56	1528	21	1	1	1527	1	1528	2699
ORI10020006	99.074	216	2	0	1509	1724	1576	1791	388
ORI96000442	97.382	1528	37	3	1	1527	1789	264	2597
ORI96000442	97.209	215	6	0	1510	1724	215	1	364
ORI10020007	97.317	1528	40	1	1	1527	1	1528	2593
ORI10020007	98.14	215	4	0	1510	1724	1577	1791	375
ORI96000440	97.251	1528	41	1	1	1527	1	1528	2588
ORI96000440	97.674	215	5	0	1510	1724	1577	1791	370
ORI96000441	94.506	1529	81	3	1	1527	1	1528	2355
ORI96000441	95.833	216	9	0	1509	1724	1576	1791	350