DoriC

RefSeq

NC_017223.1

Accession number

NC_017223.1

DoriC accession number

ORI96000380

OriC length

1724 nt

OriC AT content

0.428654

The location of oriC region

4122513..4124236 nt

Browse in NCBI

OriC map

OriC sequences

-ATCGGGAAATCCCGTTTTTCCCGCATACCAGGCCCAAGTGCCTGGTTACAACGCCCCAGGAACATAGCTTCTGGGGCGTTGTTGCTTTTGCCATCGCCGCACGGCATGCAGTTAGTGTTTACTAACATCACTACGGGCTTGGATAACTTTGTGGATAAGCCTCCGCCCGGCACCTGGGTCGGACAGGCTTGCGCGCGCCGACGCCGGACATGGTGCTGGAGTTTTACACAGCGGATGACATCGTTATTTCGCGCCACGGGTGGGACGATGGTGCGAGTCGCCCCGGGCAGCTTCTTTCGTTGATCTACGCTTGCCAGGGAAAATCTCCTGTAAATCCACGGTGTTACGCGATCAGATATGCATGCTGGGGTTTCCGGCGCAGCTCCGGACGTCACGGTTTGGCGACCTCGGGCCCACCTCCATTACGGGTCGGGCCCGATTTGTTCACAAAGATATCCCCAATTTTCTTGCCTGTATCGAGACATATTCCAGGAGGATTCCTGATCGAAAAATTTGTGGATACTTCTGGGGATTGATCCCCAATTCAGCACGGTTGTGTACCGGCGCCATGGTTGTTCTTCGCCAGTGCCGGCATCGACGCCAGTCTCGAGTCGGTCATCAACCAACACGGGTGGATTCGACGGAGGGCATTGATGCGGCAACGGCACGCGTATCCCGATGCCCCGCCGGGCGATCGGGTTGTCCACAGGGGGCGGTGGATAAGATGGTGATGCAGGCCGCACAAATTTCCGCGTCCACGTATGAATGTTGCCTTGGTGTTACCAGTCTCAGGCGGGTCCTAGCCGAAAGTATTAAGCCGTTGGATGGTAGCGTTTTCCCTGCGTGATCGATGCGGCTCGACGGACCTGAACGAGACACCGGTCTTATATTTCTGCTCCTCGGTGTTGGCAGTATTGAGTCGCGATGTTTCACGTGAAACGAAAATTGCCATTCGATGCCATGGCCCGTGACCACCTGCTTTGATTACATGCTTCGTGGTGGGCATGCCGCTTGCGCTATATCGGATTTGTCCGGCCCCCCGCTCAACGAGTCCAGGACATTCCGCAAGTCGGAGAAATCCTTGAGCCCAGCAACGGGCATGCGGCGTGTTGACGACGCCCGCGAGATTTCCTGGACGAGCCATCCCATTGGCCCTGCGTTTCGAGATCTTGTCCCGTGCGCGGGGGCCCGCGCAGTCCGGACATTCTGCCGGCACACGAAACGGGATGCGGATCGAGCCTGGAGATCGAATGTTGGGCGTAGCCGGCCGTGCGCGTGTAGCGGAGAAGGGACAGGCGTTGGCGAGCGCAGTGTACGGAGGAGTGCGGTACTTGCCTGATCGGGATCATCCAAATCGCGGCAGCCGGGAAAGCCGGCTTGCTTCTGGTCATTCCGCCATGGCCGTTTGACGACAAAACTGCGCTTGTTTTGGCCTAGGGGTAGGGTAGGGGTAAAAACATCGTTGTTTTTGGCTGCCCGGAACCCCGTGGCAGACAGCTCATGCTGCCGTTGTTTCACGTGAAACATGTAATCGCATTATTGAGGGTCGGAACAGGCGCCGCATGTTTCACGTGAAACATTGCTAGGCCTGGCGTTTTGGACAGAGGCCGTGGCGCATAAGCCGCATAGATCGTACGGATTACAGGGCTTACGATGTTTCACGTGAAACGCCGAACGAGGTGCCACTATAATGGCCTCGGAACGCTCTTTCATCTCTCCCCATCgidA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif ATGTTTCACGTGAAAC

Start	P-value		Site
1654	1.05e-10	AGGGCTTACG	ATGTTTCACGTGAAAC	GCCGAACGAG
1563	1.05e-10	CAGGCGCCGC	ATGTTTCACGTGAAAC	ATTGCTAGGC
925	1.05e-10	TTGAGTCGCG	ATGTTTCACGTGAAAC	GAAAATTGCC
1510	2.34e-10	CATGCTGCCG	TTGTTTCACGTGAAAC	ATGTAATCGC

Motif RMCATBGYYRTTYBDCGCCA

Start	P-value		Site
566	3.87e-10	GTGTACCGGC	GCCATGGTTGTTCTTCGCCA	GTGCCGGCAT
237	9.48e-10	CACAGCGGAT	GACATCGTTATTTCGCGCCA	CGGGTGGGAC
1395	5.15e-09	TGGTCATTCC	GCCATGGCCGTTTGACGACA	AAACTGCGCT
1456	1.69e-08	TAGGGGTAAA	AACATCGTTGTTTTTGGCTG	CCCGGAACCC
942	1.69e-08	ACGTGAAACG	AAAATTGCCATTCGATGCCA	TGGCCCGTGA

Motif AWAAMTTTGTGGATA

Start	P-value		Site
508	1.97e-10	TTCCTGATCG	AAAAATTTGTGGATA	CTTCTGGGGA
143	1.05e-09	ACGGGCTTGG	ATAACTTTGTGGATA	AGCCTCCGCC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96000380	100.0	1724	0	0	1	1724	1	1724	3184
ORI10030012	100.0	1724	0	0	1	1724	1	1724	3184
ORI96000433	99.942	1724	1	0	1	1724	1	1724	3179
ORI10020006	98.626	1528	20	1	1	1527	1	1528	2704
ORI10020006	99.074	216	2	0	1509	1724	1576	1791	388
ORI96000442	97.448	1528	36	3	1	1527	1789	264	2603
ORI96000442	97.209	215	6	0	1510	1724	215	1	364
ORI10020007	97.382	1528	39	1	1	1527	1	1528	2599
ORI10020007	98.14	215	4	0	1510	1724	1577	1791	375
ORI96000440	97.317	1528	40	1	1	1527	1	1528	2593
ORI96000440	97.674	215	5	0	1510	1724	1577	1791	370
ORI96000441	94.572	1529	80	3	1	1527	1	1528	2361
ORI96000441	95.833	216	9	0	1509	1724	1576	1791	350