DoriC

RefSeq

NC_018828.1

Accession number

NC_018828.1

DoriC accession number

ORI96000440

OriC length

1791 nt

OriC AT content

0.432719

The location of oriC region

4885589..4887379 nt

Browse in NCBI

OriC map

OriC sequences

-ATCGGGAAATCCCGTTTTTCCCGCATACCAGGCCCAAGTGCCTGGTTACAACGCCCCAGGAACATAGCTTCTGGGGCGTTGTTGCTTCTGCCATCGCCGCACGGCATACAGTTAGTGCTTACTAACATCACTACGGGCTTGGATAACTTTGTGGATAAGCCTCCATCCGGCACCTGGGTCGGACAGGTTTGCGCGCGCCGACGCCGGACATGGTGCTGGAGTTTTACACAGCGGATGACATCGTTATTTCGCGCCACGGGTGGGACGATGGTGCGAGTCGCCCCGGGCAGCTTCTTTCGTTGATCTACGCTTGCCAGGGAAAATCTCCTGTAAATCCACGGTGTTACGCGATCAGATATGCATGCTGGGGTTTCCGGCGCAGATCCGGACGTCACGGTTTGGTGACCTCGGGCCCACCTCCATTACGGGTCGGGCCCGATTTGTTCACAAAGATATCCCCAATTTTCTTGCCCGTATCGAGACATATTCCAGGAGGATTCCTGATCGAAAAATCTGTGGATACTTCTGGGGATTGATCCCCAATTCAGCACGGTTGTGTACCGGCGCCATGGTTGTTCTTCGCCAGTGCCGGCATCGACGCCAGTCTCGAGGCGGTCATCAACCAACACGGGCGGATTCGACGGAGGGCATTGATGCGGCAACGGCACGCGTATCCCGATGTCCCGCCGGGCGATCGGGTTGTCCACAGGGGGCGGTGGATAAGATGGTGATGCAGACCGCACAAATTTCCGCGTCCACGTATGAATGTTGCCTTGGTGTTGCCAGTCTCAGGCGGGTCCTAGCCGAAAGTATTAAGCCGTTGGATGGTAGCGTTTTCCCTGCGTGATCGATGCGGCTCGACGGACCAGAACGAGACACCGGTCTTATATTTCGGCTCCCCGGTGCTGGCAGTATTGAGTCGCGATGTTTCACGTGAAACGAAAATTGCCATTCGATGCCATGGCCCGTAGCTACCTGCTTTGATTACATGCTTCGTGGTGGGCATGCCGCTTGCGCGTATATCGGATTCGCCGGGCCGCCCGCTCAACGAGTCCAGGACATTCCGCAAGTCGGAGAAATCCTTGAGCCCAGCAACGGGCATGCGGCGTGTTGACGACGCCCGCGAGATTTCCTGGACGAGCCATCCCATTGGCCCTGCGTTTCGAGATCTTGTCCCGTGCGCGGGGGCCCGCGCAGCCCGGATATTCTGCCGGCACACGAAACGGGATGCGGATCGAGCCTGGAGATCGAATGTTGGGCGTAGCCGGCCGTGCGCGTGCAGCGGAGAAGGGACAGGCGTTGGCGAGCGCAGTGTACGGAGGAGTGCGGTACTGACCTGATCGGGATTATCCAAATCGTGGCAGCCGGGAAAGCCGGCTTGCTTCTGATCATTCCGACATGGTCGTTTGACGACAAAACTGCGCTTGTTTTGGCCTAGGGGTAGGGTAGGGGTAAAAACTTCGTTGTTTTTGGCTGCCCGGAACCGCGTGGCAGACAGTTCATGTTGCCGTTGTTTCACGTGAAACATCACGCTGACGGCTTGAGTGAGTCTGCCTCAATGCCGAATCAAGGAGTATTGTTTCACGTGGAACATGTAATCGCATTATTGAGGGTCGGAACAGGCGCCGCATGTTTCACGTGAAACATTGCTAGGCCTGGCGTTTTGGGCAGAGGCCGTGGCGCATAAGCCGCATAGATCGTACGGATTACAGGGCTTACGATGTTTCACGTGAAACACCCAACGAGGTGCCACTATAATGGCCACGGAACGCTCTTTCATCTCTCCCCATCgidA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif WTGTTTCACGTGAAACA

Start	P-value		Site
1721	2.24e-11	AGGGCTTACG	ATGTTTCACGTGAAACA	CCCAACGAGG
1630	2.24e-11	CAGGCGCCGC	ATGTTTCACGTGAAACA	TTGCTAGGCC
1511	4.87e-11	CATGTTGCCG	TTGTTTCACGTGAAACA	TCACGCTGAC
925	1.16e-10	TTGAGTCGCG	ATGTTTCACGTGAAACG	AAAATTGCCA
1577	1.96e-10	TCAAGGAGTA	TTGTTTCACGTGGAACA	TGTAATCGCA

Motif GACATBGTYRTTYBDCGCCA

Start	P-value		Site
1396	8.81e-11	TGATCATTCC	GACATGGTCGTTTGACGACA	AAACTGCGCT
237	4.32e-10	CACAGCGGAT	GACATCGTTATTTCGCGCCA	CGGGTGGGAC
566	1.59e-09	GTGTACCGGC	GCCATGGTTGTTCTTCGCCA	GTGCCGGCAT
942	3.91e-09	ACGTGAAACG	AAAATTGCCATTCGATGCCA	TGGCCCGTAG

Motif AWAAMTYYGTKGWTW

Start	P-value		Site
143	2.80e-09	ACGGGCTTGG	ATAACTTTGTGGATA	AGCCTCCATC
508	4.16e-09	TTCCTGATCG	AAAAATCTGTGGATA	CTTCTGGGGA
1455	3.23e-08	GGTAGGGGTA	AAAACTTCGTTGTTT	TTGGCTGCCC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96000440	100.0	1791	0	0	1	1791	1	1791	3308
ORI10020007	99.553	1791	8	0	1	1791	1	1791	3264
ORI10020006	97.822	1791	39	0	1	1791	1	1791	3092
ORI96000442	97.432	1791	44	2	1	1791	1789	1	3051
ORI96000441	94.475	1792	97	2	1	1791	1	1791	2760
ORI96000380	97.317	1528	40	1	1	1528	1	1527	2593
ORI96000380	97.674	215	5	0	1577	1791	1510	1724	370
ORI10030012	97.317	1528	40	1	1	1528	1	1527	2593
ORI10030012	97.674	215	5	0	1577	1791	1510	1724	370
ORI96000433	97.251	1528	41	1	1	1528	1	1527	2588
ORI96000433	97.674	215	5	0	1577	1791	1510	1724	370