DoriC

RefSeq

NC_016114.1

Accession number

NC_016114.1

DoriC accession number

ORI95030415

OriC length

1081 nt

OriC AT content

0.350601

The location of oriC region

3685576..3686656 nt

Browse in NCBI

OriC map

OriC sequences

dnaACGCCCGGCGTCGGCAGAACGCGCCCAGGGCGCCTCATGAGGACCGTACGAGGTCCTCATGAGGCGCCCTTCTTCATGGCCGAAGCCGTAAGCCGACGTAACCCGCGTCGGCGGCTGCCCGTGGACGGCCTCAGCGGCGCGAAGGCCCGCGGCGGCACGCCACGCTCGCCCGGCACGTCACCGGAGCCGCTTGTCCTGGAGCGCTCCTGAGCCTTTCGGACGCGCTTCCGCGGCTGCGGCCGGCCGTCTCCGAGGGTCTTCACGCACGCTCTCCCACTCCGGCCGACGGCTCGCGAGACCGCTCGATCCATGAGGAGTGTTCGAATACAGGGCTCTGACGAGGGCTTCTCCACAGAAGAAGCCGGAATCCGGCATCCACAGCCTGGGGACTGTGAAGTTGTCCAGATTGCGTCCACAGGGCCTGCTGTCGATACTCCATCAGACCAGGTCACATGGTTGGGGATTTGTGGTCAACGATGATCCACAGCCTGTGGACAGAATCTTCGTCCACAGGTGCTCGACGATGTTGTCCACCGGCGGCCCACAGGCACGCCGTCGTTGTCCCCAGCTTCTCCACACCCCTGTCCACTGTTCGGCAACCCGACACCGCCTTTCACTGCCGAGAGTGAAAGGCGTCACACCGGGAGGGCGGATTGAGCTGTGGGGAACGGGGGTAAAGCTGGGGACAGCCCTGGGGAGAAGTCACCCCGCCCTGTGCATCGGGTGTGCAGAACTTTCGCGTGTCCACAGAACCGCGTGGTTGTCCACCGGTGCCACCCACAGGGGCAGTGGACAAAAAACCAACGTTGACCTGCGCAAACCACGTTATCCACGGTTTCCACAGGGCCTACTACTACTACCACTCAGAGTTAGCCAGGAATCAGCTTCGAAGCAGGGCCTGTGCACAACTCGAGCGGCGACCTCGGCACGCCTCTCGGCGCGACTTGACCCCGAGCAGCAACGAGTGTCGGTCCCGTACGTCAGACTGGACCCCGGCGGTCTCCCCCAGCCCTTCGGCAGGGAGCCCCGTTCAGACGACGAAGGCCAGCAGGGCGAGCGAGCAACAGCAGGAGGCGGTTCCGdnaN

dnaaCGCCCGGCGTCGGCAGAACGCGCCCAGGGCGCCTCATGAGGACCGTACGAGGTCCTCATGAGGCGCCCTTCTTCATGGCCGAAGCCGTAAGCCGACGTAACCCGCGTCGGCGGCTGCCCGTGGACGGCCTCAGCGGCGCGAAGGCCCGCGGCGGCACGCCACGCTCGCCCGGCACGTCACCGGAGCCGCTTGTCCTGGAGCGCTCCTGAGCCTTTCGGACGCGCTTCCGCGGCTGCGGCCGGCCGTCTCCGAGGGTCTTCACGCACGCTCTCCCACTCCGGCCGACGGCTCGCGAGACCGCTCGATCCATGAGGAGTGTTCGAATACAGGGCTCTGACGAGGGCTTCTCCACAGAAGAAGCCGGAATCCGGCATCCACAGCCTGGGGACTGTGAAGTTGTCCAGATTGCGTCCACAGGGCCTGCTGTCGATACTCCATCAGACCAGGTCACATGGTTGGGGATTTGTGGTCAACGATGATCCACAGCCTGTGGACAGAATCTTCGTCCACAGGTGCTCGACGATGTTGTCCACCGGCGGCCCACAGGCACGCCGTCGTTGTCCCCAGCTTCTCCACACCCCTGTCCACTGTTCGGCAACCCGACACCGCCTTTCACTGCCGAGAGTGAAAGGCGTCACACCGGGAGGGCGGATTGAGCTGTGGGGAACGGGGGTAAAGCTGGGGACAGCCCTGGGGAGAAGTCACCCCGCCCTGTGCATCGGGTGTGCAGAACTTTCGCGTGTCCACAGAACCGCGTGGTTGTCCACCGGTGCCACCCACAGGGGCAGTGGACAAAAAACCAACGTTGACCTGCGCAAACCACGTTATCCACGGTTTCCACAGGGCCTACTACTACTACCACTCAGAGTTAGCCAGGAATCAGCTTCGAAGCAGGGCCTGTGCACAACTCGAGCGGCGACCTCGGCACGCCTCTCGGCGCGACTTGACCCCGAGCAGCAACGAGTGTCGGTCCCGTACGTCAGACTGGACCCCGGCGGTCTCCCCCAGCCCTTCGGCAGGGAGCCCCGTTCAGACGACGAAGGCCAGCAGGGCGAGCGAGCAACAGCAGGAGGCGGTTCCGdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CGWVGTTGTCCACVGBTBSYMCACA

Start	P-value		Site
553	1.02e-11	ACAGGCACGC	CGTCGTTGTCCCCAGCTTCTCCACA	CCCCTGTCCA
521	2.40e-11	AGGTGCTCGA	CGATGTTGTCCACCGGCGGCCCACA	GGCACGCCGT
755	4.71e-11	CACAGAACCG	CGTGGTTGTCCACCGGTGCCACCCA	CAGGGGCAGT
392	2.03e-10	CTGGGGACTG	TGAAGTTGTCCAGATTGCGTCCACA	GGGCCTGCTG
820	3.28e-10	CCTGCGCAAA	CCACGTTATCCACGGTTTCCACAGG	GCCTACTACT

Motif CASVGSCTGTGSACA

Start	P-value		Site
482	3.29e-09	AACGATGATC	CACAGCCTGTGGACA	GAATCTTCGT
892	2.58e-08	AGCTTCGAAG	CAGGGCCTGTGCACA	ACTCGAGCGG
780	1.59e-07	GTGCCACCCA	CAGGGGCAGTGGACA	AAAAACCAAC
376	4.48e-07	ATCCGGCATC	CACAGCCTGGGGACT	GTGAAGTTGT
717	1.07e-06	CCGCCCTGTG	CATCGGGTGTGCAGA	ACTTTCGCGT

Motif TGASGMGSSCTTCTYCAYRGMMGAAGCCGKAAKCCGRCRT

Start	P-value		Site
335	1.94e-21	TACAGGGCTC	TGACGAGGGCTTCTCCACAGAAGAAGCCGGAATCCGGCAT	CCACAGCCTG
59	6.16e-21	GAGGTCCTCA	TGAGGCGCCCTTCTTCATGGCCGAAGCCGTAAGCCGACGT	AACCCGCGTC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI95030415	100.0	1081	0	0	1	1081	1	1081	1997
ORI95010913	87.285	755	71	14	344	1081	747	1	839
ORI92510411	85.86	785	79	22	317	1081	233	1005	806
ORI96010332	81.429	630	99	17	374	994	661	41	499