DoriC

RefSeq

NC_018000.1

Accession number

NC_018000.1

DoriC accession number

ORI96000428

OriC length

406 nt

OriC AT content

0.487685

The location of oriC region

6104457..6104862 nt

Browse in NCBI

OriC map

OriC sequences

hemETCGCCATTTCCCCAATCTAAAAATAAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCAGTTCTTCCAATCAGCAGGGATCGACGCGCGCATGGTGGGAGAAAGTTCGACCGAATTTCCGACGGATCGGGAAAAGCCGCGAAAACTCAGAAAAGTCAGGATCTTGGCTGCACTCCCGGATTTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCATGAGTCTTGTCCACAACAGCGCCTGGGCGTTTTTCGTCTCGGTACCGAATGTGAATAACGCGGCGGTTTTCCACCTGCCTGAGCGGCGACCGCGATTTTGGCGTCTGGTGTCCCGGCCTATCAACAGCCTCCGGAGAATTGC-

hemeTCGCCATTTCCCCAATCTAAAAATAAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCAGTTCTTCCAATCAGCAGGGATCGACGCGCGCATGGTGGGAGAAAGTTCGACCGAATTTCCGACGGATCGGGAAAAGCCGCGAAAACTCAGAAAAGTCAGGATCTTGGCTGCACTCCCGGATTTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCATGAGTCTTGTCCACAACAGCGCCTGGGCGTTTTTCGTCTCGGTACCGAATGTGAATAACGCGGCGGTTTTCCACCTGCCTGAGCGGCGACCGCGATTTTGGCGTCTGGTGTCCCGGCCTATCAACAGCCTCCGGAGAATTGC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AAAAVTCA

Start	P-value		Site
173	2.39e-05	AAAAGCCGCG	AAAACTCA	GAAAAGTCAG
182	3.66e-05	GAAAACTCAG	AAAAGTCA	GGATCTTGGC
77	5.98e-05	TATCAAGGAT	TAAAATCA	ATCCTCAGTT
19	5.98e-05	TCCCCAATCT	AAAAATAA	AACCTTATTG

Motif CGMVTGNGADTTTBKCGTC

Start	P-value		Site
242	2.10e-09	GGAGTCGATC	CGCGTGACAATTTGTCGTC	GGCATGAGTC
351	3.95e-09	GCCTGAGCGG	CGACCGCGATTTTGGCGTC	TGGTGTCCCG
284	9.86e-09	TCCACAACAG	CGCCTGGGCGTTTTTCGTC	TCGGTACCGA
310	5.37e-08	GTCTCGGTAC	CGAATGTGAATAACGCGGC	GGTTTTCCAC

Motif CHTDTCVACAA

Start	P-value		Site
270	1.71e-06	CGGCATGAGT	CTTGTCCACAA	CAGCGCCTGG
221	7.85e-06	ATTTGCGATT	CCTGTGGACAA	GGAGTCGATC
381	2.34e-05	GGTGTCCCGG	CCTATCAACAG	CCTCCGGAGA
30	2.92e-05	AAAATAAAAC	CTTATTGAAAA	GGTTTCTATT
5	4.56e-05	TCGC	CATTTCCCCAA	TCTAAAAATA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI96000428	100.0	406	0	0	1	406	1	406	0.0	750
ORI95030437	85.539	408	55	4	1	406	1	406	0.0	424
ORI92730253	85.287	401	51	7	10	406	9	405	0.0	407
ORI96000439	75.795	409	73	23	11	406	10	405	0.0	183
ORI96000389	75.735	408	75	21	11	406	10	405	0.0	183
ORI96000388	75.735	408	75	21	11	406	10	405	0.0	183
ORI94030382	75.735	408	75	21	11	406	10	405	0.0	183
ORI10030017	75.735	408	75	21	11	406	82	477	0.0	183
ORI93040198	92.727	55	4	0	34	88	56	110	2.93e-16	81
ORI92740160	87.5	72	5	4	19	88	41	110	2.93e-16	81
ORI92540152	87.5	72	5	4	19	88	89	158	2.93e-16	81
ORI40030119	92.727	55	4	0	34	88	32	86	2.93e-16	81
ORI10040059	87.5	72	5	4	19	88	89	158	2.93e-16	81