DoriC

RefSeq

NC_012587.1

Accession number

NC_012587.1

DoriC accession number

ORI92730253

OriC length

405 nt

OriC AT content

0.483951

The location of oriC region

3538745..3539149 nt

Browse in NCBI

OriC map

OriC sequences

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemeTCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

hemETCGGCATCCCCCAATCTAAAATCAAACCTTATTGAAAAGGTTTCTATTTCTTAGAGTCGGTGGCTATCAAGGATTAAAATCAATCCTCAGTTCGTCCAATCAGCGCAGATCTCGACGGGCGTGGCGGGAGAAGGATCACCCGAATTCATTATAGATCGGGCAAAGCCTGGAAAACGTAGAAAAGTCAGCATCTTGCCTTCGCCACGGAAATTGCGATTCCTGTGGACAAGGAGTCGATCCGCGTGACAATTTGTCGTCGGCTTGAGTCTTGTCCACAACTGCGTCTGGGCGTTTTGCGCTTGGGCATCAGATGTGAATAACGCGACGCTTTTCCACGGGCCCGGGTGGCGACCGCGATTCAAGCCGTCTGGTGTCCCGGTCTATCAACAGCCTCCGGAGAATTGC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TAAAATCAAWCCTYA

Start	P-value		Site
17	1.30e-09	TCCCCCAATC	TAAAATCAAACCTTA	TTGAAAAGGT
75	2.63e-09	TATCAAGGAT	TAAAATCAATCCTCA	GTTCGTCCAA

Motif TDGAAAA

Start	P-value		Site
168	5.56e-05	GGGCAAAGCC	TGGAAAA	CGTAGAAAAG
177	1.58e-04	CTGGAAAACG	TAGAAAA	GTCAGCATCT
32	1.58e-04	TCAAACCTTA	TTGAAAA	GGTTTCTATT
223	2.17e-04	GCGATTCCTG	TGGACAA	GGAGTCGATC

Motif CTATCAA

Start	P-value		Site
381	5.31e-05	GTGTCCCGGT	CTATCAA	CAGCCTCCGG
64	5.31e-05	GAGTCGGTGG	CTATCAA	GGATTAAAAT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92730253	100.0	405	0	0	1	405	1	405	0.0	749
ORI95030437	91.4	407	32	3	1	405	1	406	0.0	555
ORI96000428	85.287	401	51	7	9	405	10	406	0.0	407
ORI96000439	75.953	341	55	23	10	336	10	337	2.2e-37	150
ORI92740160	89.855	69	7	0	18	86	42	110	4.85e-19	90
ORI92540152	89.855	69	7	0	18	86	90	158	4.85e-19	90
ORI10040059	89.855	69	7	0	18	86	90	158	4.85e-19	90
ORI93040198	94.545	55	3	0	32	86	56	110	6.28e-18	86
ORI40030119	94.545	55	3	0	32	86	32	86	6.28e-18	86