DoriC

RefSeq

NC_010994.1

Accession number

NC_010994.1

DoriC accession number

ORI92540152

OriC length

122 nt

OriC AT content

0.52459

The location of oriC region

1..122 nt

Browse in NCBI

OriC map

OriC sequences

hemECAGCCAGAGAGGCGGAGGGCTGAGGCTTTCGCCATCGAGAACCCTCATGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTC-

hemeCAGCCAGAGAGGCGGAGGGCTGAGGCTTTCGCCATCGAGAACCCTCATGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTC-

hemECAGCCAGAGAGGCGGAGGGCTGAGGCTTTCGCCATCGAGAACCCTCATGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif GRSGCGKRKSGCTSARGC

Start	P-value		Site
9	2.46e-10	CAGCCAGA	GAGGCGGAGGGCTGAGGC	TTTCGCCATC
57	1.78e-09	ATGATCTTTC	GGCGCGTGTCGCTCAAGC	GCTTCTTCCC

Motif CAKCSAGA

Start	P-value		Site
1	2.50e-05	.	CAGCCAGA	GAGGCGGAGG
33	3.91e-05	AGGCTTTCGC	CATCGAGA	ACCCTCATGA

Motif AAAGRT

Start	P-value		Site
108	2.34e-04	AGATATTTTA	AAAGGT	TTCTATTTC
96	4.93e-04	ATAAAAAATC	AAAGAT	ATTTTAAAAG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92540152	100.0	122	0	1	122	1	122	0.0	226
ORI10040059	91.803	122	10	1	122	1	122	4.48416e-44	171
ORI92740160	100.0	74	0	49	122	1	74	4.58e-34	137
ORI93040198	95.946	74	3	49	122	1	74	4.61e-29	121
ORI40030119	97.959	49	1	74	122	2	50	1.68e-18	86