RefSeq NC_011369.1
Accession number NC_011369.1
DoriC accession number ORI92740160
OriC length 424 nt
OriC AT content 0.542453
The location of oriC region 4085861..4086284 nt
Browse in NCBI
OriC map
OriC sequences
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemeGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
hemEGATCTTTCGGCGCGTGTCGCTCAAGCGCTTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGGATTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTGAAAATGATTCCAAATCCTTCCGGATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACCTCATCTCGACAATTCAACCTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGCAAAATTCGAAATGTGGATAAGGGGGCATGTTTTCCCTTGCCGGGAGATGCCTCGCCGCCTTAGCTCTGTTTCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC-
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TYDTCNMVWGGBCGTGGADAA

StartP-valueSite
4006.89e-10TCATCCAGTCTTTTCAACAGGCAGTGGAAAATAGC
2309.41e-09GATCAATGATTTTTCTCGTGGCTGTGGATAAGCTGTGGACC
1671.15e-08TTTCGCCATTTCATCGAAAGTTCGGGGAGAAACCGAATCTG
2895.00e-08CTCTTCCACATCGTCCACAGGGCCTGCCGAAACCGATCTGC
1256.47e-08CCGATGCCATTTGTCGCGTGCTCGCAAAAAATATCGGAAGG

Motif GGSGCRTG

StartP-valueSite
91.45e-05GATCTTTCGGCGCGTGTCGCTCAAGC
3412.27e-05TGTGGATAAGGGGGCATGTTTTCCCTTG

Motif GSMGATGCC

StartP-valueSite
3624.64e-06TCCCTTGCCGGGAGATGCCTCGCCGCCTT
1147.18e-06TCCATCCACTGCCGATGCCATTTGTCGCG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI92740160 100.0 424 0 0 1 424 1 424 0.0 784
ORI93040198 87.793 426 49 3 1 424 1 425 0.0 496
ORI92540152 85.681 433 45 17 1 424 49 473 0.0 440
ORI40030119 85.36 403 52 7 26 424 2 401 0.0 411
ORI10040059 83.217 429 58 13 1 422 49 470 0.0 381
ORI95030437 90.278 72 6 1 39 110 17 87 3.94e-20 94
ORI92730253 89.855 69 7 0 42 110 18 86 5.09e-19 90
ORI96000428 87.5 72 5 4 41 110 19 88 3.07e-16 81