DoriC

RefSeq

NC_008380.1

Accession number

NC_008380.1

DoriC accession number

ORI40030119

OriC length

956 nt

OriC AT content

0.394351

The location of oriC region

5056187..5057142 nt

Browse in NCBI

OriC map

OriC sequences

-GCCCCGCCTCGCACACGATCCACCAACAGACGCACATGCTCGGGATCGGCCTGCGGTGTAATGCCGTGACCGAGATTGAAGATCAACGGACCATTGCCGAGATGCTGCAGAATATCATCGATGCCTTCCTCCAGCGCCCGGCCGCCGGCAACGACCCGCATCGGATCCAGGTTGCCCTGAACCGGTCCGTCTTTCTGAAGTTCGGCTGCAAAGGCCAGCGGGACCGACCAGTCGAGGCCGATCGCATCTGCGCCCGTCTTCTGGCGATAGGTCTTGAGCTGATAGCCGGCGCCCTTGGCAAAAGCGATGATGCGAGCATGCGGCCGTCGCGATTTGACGGAAGCAATCATCCGCGCAACCGGCCTGATCGCAAACGCCTCGAACTCCTTCTCGCCGAGAACACCTGCCCAGGAATCGAAGATCTGCACGGCATCGGCGCCGGCATCGATCTGGGCGACGAGATAATCGGCCGATACGTCGGCAAGCAGCATCAACAGATGCTCGAAAGCGCGGGCATGCTTGTAGGCGAAGAGACGGGCAGGGGCCTGATCCGGCGTGCCGTGACCGGCAATCATGTAGGTCGCAACCGTCCATGGCGCCCCGCAGAAGCCGAGCAGCGTCGTCTCCGCTGGCAGTTCTTCACGCAGCCGTCGCACCGTCTCCAGAACCGGCCTGAGATAATCGACAACCTCTTCGCCGTTCAAACTGCCGATCCCGGCTTCATCGATCGGATCCATCTCCGGACCATGGCCCTCGGTGAACCGGACATTCCGCTTCATTGCGTCTGGAATGACCAGGATATCGGAAAACAGAATGGCCGCATCGAAGCCATAGCGGCGGATCGGCTGCAATGTCACTTCGACGGCGTGCTCAGGCGTATAGCAGAGATCGAGAAAACTCCCTGCCTTTGCCCGTGTCTCCCGATATTCCGGAAGATAACGTCCTGCCTGTCTCAThemE

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CGAKATGHCGGAARAHADCAT

Start	P-value		Site
922	4.10e-10	CCGTGTCTCC	CGATATTCCGGAAGATAACGT	CCTGCCTGTC
330	9.89e-10	GCGGCCGTCG	CGATTTGACGGAAGCAATCAT	CCGCGCAACC
98	1.54e-09	GGACCATTGC	CGAGATGCTGCAGAATATCAT	CGATGCCTTC
471	3.19e-09	GATAATCGGC	CGATACGTCGGCAAGCAGCAT	CAACAGATGC
795	3.71e-09	CTGGAATGAC	CAGGATATCGGAAAACAGAAT	GGCCGCATCG

Motif GKCCTSAKSCGDAANGCCKTGANCKVVWW

Start	P-value		Site
48	4.08e-13	GCTCGGGATC	GGCCTGCGGTGTAATGCCGTGACCGAGAT	TGAAGATCAA
543	3.80e-11	GACGGGCAGG	GGCCTGATCCGGCGTGCCGTGACCGGCAA	TCATGTAGGT
867	9.61e-11	CTTCGACGGC	GTGCTCAGGCGTATAGCAGAGATCGAGAA	AACTCCCTGC
256	2.44e-10	ATCTGCGCCC	GTCTTCTGGCGATAGGTCTTGAGCTGATA	GCCGGCGCCC
361	7.86e-10	CCGCGCAACC	GGCCTGATCGCAAACGCCTCGAACTCCTT	CTCGCCGAGA

Motif WTCGGMTBCA

Start	P-value		Site
841	1.88e-06	ATAGCGGCGG	ATCGGCTGCA	ATGTCACTTC
727	4.04e-06	GGCTTCATCG	ATCGGATCCA	TCTCCGGACC
160	4.04e-06	AACGACCCGC	ATCGGATCCA	GGTTGCCCTG
201	6.85e-06	CTTTCTGAAG	TTCGGCTGCA	AAGGCCAGCG
769	2.08e-05	GAACCGGACA	TTCCGCTTCA	TTGCGTCTGG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score