DoriC

RefSeq

NC_018700.1

Accession number

NC_018700.1

DoriC accession number

ORI96000439

OriC length

405 nt

OriC AT content

0.481481

The location of oriC region

3285715..3286119 nt

Browse in NCBI

OriC map

OriC sequences

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemeTTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

hemETTGCCGCTTCCTAATCTAAAAATAAAACTGATTTTATAAGGTTTCTATTTCTTAGAGTCGGTGGGTATCAAGGATTAAAATCAATCCTCATCCTATCCAGCCCGCGTCAATCTCCGGCAAAGAGGCGGGAGAGATTCCGGCCGAATTGCGCTGTAAGTGGGGAAACCCGCGAAAACACTGCAGAGTCAGCCCCTTGCCGGCGATCGGGAGTTTGCGGTTCCTGTGGATGAGGAGTCGATCCGCGTGACAATTTGTCGTGGCCATGAGTCTTGTCCACATGCCCGGGCAAGAGATTTCCGGTTAGGTGTCAGATGTGAACAAGTCGCCGCTTTTCCACTTGCCTGAAGCCAGGCGCCGCCGTTAGCTGTTTTTGTCCCGCCTTATCAACAGACCGCGGAGAATTGC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CTTDTCMACWKRCC

Start	P-value		Site
269	1.10e-08	GGCCATGAGT	CTTGTCCACATGCC	CGGGCAAGAG
329	5.40e-08	CAAGTCGCCG	CTTTTCCACTTGCC	TGAAGCCAGG
380	1.20e-07	TTTGTCCCGC	CTTATCAACAGACC	GCGGAGAATT

Motif AAAATMAA

Start	P-value		Site
19	7.89e-06	TCCTAATCTA	AAAATAAA	ACTGATTTTA
77	1.66e-05	ATCAAGGATT	AAAATCAA	TCCTCATCCT

Motif AAACMC

Start	P-value		Site
173	1.69e-04	AAACCCGCGA	AAACAC	TGCAGAGTCA
163	3.56e-04	GTAAGTGGGG	AAACCC	GCGAAAACAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI96000439	100.0	405	0	0	1	405	1	405	0.0	749
ORI96000389	98.272	405	7	0	1	405	1	405	0.0	710
ORI96000388	98.272	405	7	0	1	405	1	405	0.0	710
ORI94030382	98.272	405	7	0	1	405	1	405	0.0	710
ORI10030017	98.272	405	7	0	1	405	73	477	0.0	710
ORI92030162	82.725	411	59	8	1	405	1	405	0.0	355
ORI96000428	75.795	409	73	22	10	405	11	406	0.0	183
ORI95030437	75.545	413	68	28	10	405	10	406	4.62428e-44	172
ORI92730253	75.953	341	55	23	10	337	10	336	2.2e-37	150