DoriC

RefSeq

NC_017221.1

Accession number

NC_017221.1

DoriC accession number

ORI96010039

OriC length

734 nt

OriC AT content

0.512262

The location of oriC region

2271134..2271867 nt

Browse in NCBI

OriC map

OriC sequences

dnaNGTGTGATTGTTCCCTTCGTCGGATTGGCTGAGGAATATTCTAGCCGTTAGGTGGCGAACTTACGTACGCTGGATGACCGGCTGTTACTATGGCGATGATGCTTTTCACGTAACTGAGTAAGTAATCGCCATAATAAGGCCGGTGGATAGTGTGGATAAGTAGGGCTGAGCCCTACAACTGCAACGGTTCATAAGTCCCTGAAAATTGTGGACAAATTCTGCATGGCTTGTGGATAAGTGGGCGAGTTTTCCACAGCCAGTTCGTCGAATTTGAGTTTTCCACATCGAGGTCGCGGTTATGCACGAGTTTTCCACAACAAAATAGTGGGTAATCCACGAGTTATCCGCCGAGTTTACCCACATCTGTGCACAACTATGTGGATAACTTTTTTGGTTTTCGCACTTTCGCACGGCGTGTTGAAGACTGTTTTTCGTCGAGGAGAATCGATTCTGGAGACCGTTTTCGGCACTTTTTCCGTCTCGCTCGCCCAAACCCGCAAAATCGGTCCTCAGAATCGATTCTCTCGTTTCATGGTTTTTTGCGTGTTCCCCTTCGAAACTCCCCTCAGTCGTCTGCGCCGACAGATCCCCTCACAAAGGGGAGCCATGAGGAATCTAATGTCTCGAATCCGTTGCCTCGACGTATCCACCAGAATCCGCCTGAGCAACCAAAAACGGCACTTTTCGGAAAGTCAGTCCAAAAAGTGCCGTTTTTCGTCTCTCAGAAGCGTTGTGdnaA

dnanGTGTGATTGTTCCCTTCGTCGGATTGGCTGAGGAATATTCTAGCCGTTAGGTGGCGAACTTACGTACGCTGGATGACCGGCTGTTACTATGGCGATGATGCTTTTCACGTAACTGAGTAAGTAATCGCCATAATAAGGCCGGTGGATAGTGTGGATAAGTAGGGCTGAGCCCTACAACTGCAACGGTTCATAAGTCCCTGAAAATTGTGGACAAATTCTGCATGGCTTGTGGATAAGTGGGCGAGTTTTCCACAGCCAGTTCGTCGAATTTGAGTTTTCCACATCGAGGTCGCGGTTATGCACGAGTTTTCCACAACAAAATAGTGGGTAATCCACGAGTTATCCGCCGAGTTTACCCACATCTGTGCACAACTATGTGGATAACTTTTTTGGTTTTCGCACTTTCGCACGGCGTGTTGAAGACTGTTTTTCGTCGAGGAGAATCGATTCTGGAGACCGTTTTCGGCACTTTTTCCGTCTCGCTCGCCCAAACCCGCAAAATCGGTCCTCAGAATCGATTCTCTCGTTTCATGGTTTTTTGCGTGTTCCCCTTCGAAACTCCCCTCAGTCGTCTGCGCCGACAGATCCCCTCACAAAGGGGAGCCATGAGGAATCTAATGTCTCGAATCCGTTGCCTCGACGTATCCACCAGAATCCGCCTGAGCAACCAAAAACGGCACTTTTCGGAAAGTCAGTCCAAAAAGTGCCGTTTTTCGTCTCTCAGAAGCGTTGTGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CGAGTTWTCCACM

Start	P-value		Site
303	1.65e-08	CGGTTATGCA	CGAGTTTTCCACA	ACAAAATAGT
242	1.65e-08	GATAAGTGGG	CGAGTTTTCCACA	GCCAGTTCGT
271	1.54e-07	TCGTCGAATT	TGAGTTTTCCACA	TCGAGGTCGC
336	2.97e-07	GGGTAATCCA	CGAGTTATCCGCC	GAGTTTACCC
638	5.60e-07	TCCGTTGCCT	CGACGTATCCACC	AGAATCCGCC

Motif TGTGGAYAAVT

Start	P-value		Site
376	5.54e-07	TGCACAACTA	TGTGGATAACT	TTTTTGGTTT
228	5.54e-07	CTGCATGGCT	TGTGGATAAGT	GGGCGAGTTT
150	5.54e-07	CGGTGGATAG	TGTGGATAAGT	AGGGCTGAGC
206	1.51e-06	CCCTGAAAAT	TGTGGACAAAT	TCTGCATGGC
364	2.54e-06	TACCCACATC	TGTGCACAACT	ATGTGGATAA

Motif CCHAAAACBGCA

Start	P-value		Site
668	9.39e-08	GCCTGAGCAA	CCAAAAACGGCA	CTTTTCGGAA
171	1.05e-06	AGGGCTGAGC	CCTACAACTGCA	ACGGTTCATA
697	1.16e-06	GAAAGTCAGT	CCAAAAAGTGCC	GTTTTTCGTC
487	1.54e-06	GTCTCGCTCG	CCCAAACCCGCA	AAATCGGTCC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010039	100.0	734	0	0	1	734	1	734	1356
ORI92510428	100.0	734	0	0	1	734	1	734	1356
ORI94010807	99.864	735	0	1	1	734	735	1	1351
ORI94010774	99.728	735	1	1	1	734	1	735	1345
ORI94010809	99.592	735	2	1	1	734	735	1	1339
ORI93010675	97.415	735	18	1	1	734	735	1	1251
ORI96010036	77.672	421	72	19	116	526	460	52	237