DoriC

RefSeq

NC_015052.1

Accession number

NC_015052.1

DoriC accession number

ORI94010807

OriC length

735 nt

OriC AT content

0.512925

The location of oriC region

1504..2238 nt

Browse in NCBI

OriC map

OriC sequences

dnaACACAACGCTTCTGAGAGACGAAAAACGGCACTTTTTGGACTGACTTTCCGAAAAGTGCCGTTTTTGGTTGCTCAGGCGGATTCTGGTGGATACGTCGAGGCAACGGATTCGAGACATTAGATTCCTCATGGCTCCCCTTTGTGAGGGGATCTGTCGGCGCAGACGACTGAGGGGAGTTTCGAAGGGGAACACGCAAAAAAACCATGAAACGAGAGAATCGATTCTGAGGACCGATTTTGCGGGTTTGGGCGAGCGAGACGGAAAAAGTGCCGAAAACGGTCTCCAGAATCGATTCTCCTCGACGAAAAACAGTCTTCAACACGCCGTGCGAAAGTGCGAAAACCAAAAAAGTTATCCACATAGTTGTGCACAGATGTGGGTAAACTCGGCGGATAACTCGTGGATTACCCACTATTTTGTTGTGGAAAACTCGTGCATAACCGCGACCTCGATGTGGAAAACTCAAATTCGACGAACTGGCTGTGGAAAACTCGCCCACTTATCCACAAGCCATGCAGAATTTGTCCACAATTTTCAGGGACTTATGAACCGTTGCAGTTGTAGGGCTCAGCCCTACTTATCCACACTATCCACCGGCCTTATTATGGCGATTACTTACTCAGTTACGTGAAAAGCATCATCGCCATAGTAACAGCCGGTCATCCAGCGTACGTAAGTTCGCCACCTAACGGCTAGAATATTCCTCAGCCAATCCGACGAAGGGAACAATCACACdnaN

dnaaCACAACGCTTCTGAGAGACGAAAAACGGCACTTTTTGGACTGACTTTCCGAAAAGTGCCGTTTTTGGTTGCTCAGGCGGATTCTGGTGGATACGTCGAGGCAACGGATTCGAGACATTAGATTCCTCATGGCTCCCCTTTGTGAGGGGATCTGTCGGCGCAGACGACTGAGGGGAGTTTCGAAGGGGAACACGCAAAAAAACCATGAAACGAGAGAATCGATTCTGAGGACCGATTTTGCGGGTTTGGGCGAGCGAGACGGAAAAAGTGCCGAAAACGGTCTCCAGAATCGATTCTCCTCGACGAAAAACAGTCTTCAACACGCCGTGCGAAAGTGCGAAAACCAAAAAAGTTATCCACATAGTTGTGCACAGATGTGGGTAAACTCGGCGGATAACTCGTGGATTACCCACTATTTTGTTGTGGAAAACTCGTGCATAACCGCGACCTCGATGTGGAAAACTCAAATTCGACGAACTGGCTGTGGAAAACTCGCCCACTTATCCACAAGCCATGCAGAATTTGTCCACAATTTTCAGGGACTTATGAACCGTTGCAGTTGTAGGGCTCAGCCCTACTTATCCACACTATCCACCGGCCTTATTATGGCGATTACTTACTCAGTTACGTGAAAAGCATCATCGCCATAGTAACAGCCGGTCATCCAGCGTACGTAAGTTCGCCACCTAACGGCTAGAATATTCCTCAGCCAATCCGACGAAGGGAACAATCACACdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif KGTGGAWAACTCG

Start	P-value		Site
482	1.65e-08	ACGAACTGGC	TGTGGAAAACTCG	CCCACTTATC
421	1.65e-08	ACTATTTTGT	TGTGGAAAACTCG	TGCATAACCG
453	1.53e-07	GCGACCTCGA	TGTGGAAAACTCA	AATTCGACGA
388	2.97e-07	GGGTAAACTC	GGCGGATAACTCG	TGGATTACCC
85	5.61e-07	GGCGGATTCT	GGTGGATACGTCG	AGGCAACGGA

Motif ABTTRTCCACA

Start	P-value		Site
576	5.55e-07	GCTCAGCCCT	ACTTATCCACA	CTATCCACCG
498	5.55e-07	AAACTCGCCC	ACTTATCCACA	AGCCATGCAG
350	5.55e-07	AAACCAAAAA	AGTTATCCACA	TAGTTGTGCA
520	1.51e-06	GCCATGCAGA	ATTTGTCCACA	ATTTTCAGGG
362	2.53e-06	TTATCCACAT	AGTTGTGCACA	GATGTGGGTA

Motif TGCVGTTTTDGG

Start	P-value		Site
56	9.16e-08	TTCCGAAAAG	TGCCGTTTTTGG	TTGCTCAGGC
554	1.03e-06	TATGAACCGT	TGCAGTTGTAGG	GCTCAGCCCT
27	1.14e-06	GACGAAAAAC	GGCACTTTTTGG	ACTGACTTTC
238	1.51e-06	GGACCGATTT	TGCGGGTTTGGG	CGAGCGAGAC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI94010807	100.0	735	0	0	1	735	1	735	1358
ORI94010774	99.864	735	1	0	1	735	735	1	1352
ORI96010039	99.864	735	0	1	1	735	734	1	1351
ORI92510428	99.864	735	0	1	1	735	734	1	1351
ORI94010809	99.457	736	2	2	1	735	1	735	1336
ORI93010675	97.415	735	19	0	1	735	1	735	1253
ORI96010036	77.672	421	72	19	210	620	52	460	237