DoriC

RefSeq

NC_017218.1

Accession number

NC_017218.1

DoriC accession number

ORI96010036

OriC length

575 nt

OriC AT content

0.554783

The location of oriC region

1543..2117 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGTATGCCTATGGCTTCCTTTACGGGAGCCATTTTTTATATCTGCGCATATCCGAGAGAATCGTTCCTGAAGACCGATTTCGGCACTTTTTCAAACCGAGCCAGAAAAAGTGCCGAAAACCGTCCTCAGAATCGATTCTCCTCGCCGATAATCATGTTCAACACGCCGTACAAAGACCCAATAATCATGAAAGTTATCCACATAGTTGTTCACAAATGTGGGCAAACTCGGCGGATAACTCGTGGATTACCCACTATTTTTCGGTGGAAAATTGGTGCATAACATGGCATTCTGTGTGGAAAACTTAACAATTGACTTTTTCCTGTGGATAAGTCGCCTATTTATCCACATGCTATACAGAAGTTATCCACAACACTCCCCAGTGGATAAGCCGTTACCGCAGTAGCCCTCCATCTACTTATCCACACTATCCACCGCACTTATTACGACGATTACTTACTTGCATACATAAGATCACCGTCATGGTGATAATCGGCCGCATCAAGCACGCAAGCAAAAGAACCAACCAACCGCTAGAATGTTCTTCAGCAAAACCGACGAAGGGAACAACCTGACdnaN

dnaaGTATGCCTATGGCTTCCTTTACGGGAGCCATTTTTTATATCTGCGCATATCCGAGAGAATCGTTCCTGAAGACCGATTTCGGCACTTTTTCAAACCGAGCCAGAAAAAGTGCCGAAAACCGTCCTCAGAATCGATTCTCCTCGCCGATAATCATGTTCAACACGCCGTACAAAGACCCAATAATCATGAAAGTTATCCACATAGTTGTTCACAAATGTGGGCAAACTCGGCGGATAACTCGTGGATTACCCACTATTTTTCGGTGGAAAATTGGTGCATAACATGGCATTCTGTGTGGAAAACTTAACAATTGACTTTTTCCTGTGGATAAGTCGCCTATTTATCCACATGCTATACAGAAGTTATCCACAACACTCCCCAGTGGATAAGCCGTTACCGCAGTAGCCCTCCATCTACTTATCCACACTATCCACCGCACTTATTACGACGATTACTTACTTGCATACATAAGATCACCGTCATGGTGATAATCGGCCGCATCAAGCACGCAAGCAAAAGAACCAACCAACCGCTAGAATGTTCTTCAGCAAAACCGACGAAGGGAACAACCTGACdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TTYYCDGTGGAWAABTCG

Start	P-value		Site
318	1.82e-10	CAATTGACTT	TTTCCTGTGGATAAGTCG	CCTATTTATC
257	2.90e-09	TACCCACTAT	TTTTCGGTGGAAAATTGG	TGCATAACAT
376	1.73e-08	TCCACAACAC	TCCCCAGTGGATAAGCCG	TTACCGCAGT
224	2.67e-08	AATGTGGGCA	AACTCGGCGGATAACTCG	TGGATTACCC
289	4.13e-08	TAACATGGCA	TTCTGTGTGGAAAACTTA	ACAATTGACT

Motif AGTTATCCACA

Start	P-value		Site
361	4.48e-07	GCTATACAGA	AGTTATCCACA	ACACTCCCCA
191	4.48e-07	TAATCATGAA	AGTTATCCACA	TAGTTGTTCA
339	1.77e-06	TAAGTCGCCT	ATTTATCCACA	TGCTATACAG
416	2.42e-06	CCCTCCATCT	ACTTATCCACA	CTATCCACCG
203	2.68e-06	TTATCCACAT	AGTTGTTCACA	AATGTGGGCA

Motif YSSYGADAAYCGTCYTCAGCA

Start	P-value		Site
110	4.19e-10	CCAGAAAAAG	TGCCGAAAACCGTCCTCAGAA	TCGATTCTCC
483	4.10e-09	ATCACCGTCA	TGGTGATAATCGGCCGCATCA	AGCACGCAAG
142	5.95e-09	CGATTCTCCT	CGCCGATAATCATGTTCAACA	CGCCGTACAA
530	2.24e-08	AACCAACCAA	CCGCTAGAATGTTCTTCAGCA	AAACCGACGA
64	2.72e-08	AGAGAATCGT	TCCTGAAGACCGATTTCGGCA	CTTTTTCAAA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010036	100.0	575	0	0	1	575	1	575	1062
ORI96010039	77.404	416	82	11	52	460	526	116	237
ORI94010807	77.404	416	82	12	52	460	210	620	237
ORI94010774	77.404	416	82	11	52	460	526	116	237
ORI92510428	77.404	416	82	11	52	460	526	116	237
ORI94010809	76.978	417	83	13	52	460	209	620	226
ORI93010675	76.923	416	84	12	52	460	210	620	226