DoriC

RefSeq

NC_014656.1

Accession number

NC_014656.1

DoriC accession number

ORI94010774

OriC length

735 nt

OriC AT content

0.514286

The location of oriC region

1639526..1640260 nt

Browse in NCBI

OriC map

OriC sequences

dnaNGTGTGATTGTTCCCTTCGTCGGATTGGCTGAGGAATATTCTAGCCGTTAGGTGGCGAACTTACGTACGCTGGATGACCGGCTGTTACTATGGCGATGATGCTTTTCACGTAACTGAGTAAGTAATCGCCATAATAAGGCCGGTGGATAGTGTGGATAAGTAGGGCTGAGCCCTACAACTGCAACGGTTCATAAGTCCCTGAAAATTGTGGACAAATTCTGCATGGCTTGTGGATAAGTGGGCGAGTTTTCCACAGCCAGTTCGTCGAATTTGAGTTTTCCACATCGAGGTCGCGGTTATGCACGAGTTTTCCACAACAAAATAGTGGGTAATCCACGAGTTATCCGCCGAGTTTACCCACATCTGTGCACAACTATGTGGATAACTTTTTTGGTTTTCGCACTTTCGCACGGCGTGTTGAAGACTGTTTTTCGTCGAGGAGAATCGATTCTGGAGACCGTTTTCGGCACTTTTTCCGTCTCGCTCGCCCAAACCCGCAAAATCGGTCCTCAGAATCGATTCTCTCGTTTCATGGTTTTTTTGCGTGTTCCCCTTCGAAACTCCCCTCAGTCGTCTGCGCCGACAGATCCCCTCACAAAGGGGAGCCATGAGGAATCTAATGTCTCGAATCCGTTGCCTCGACGTATCCACCAGAATCCGCCTGAGCAACCAAAAACGGCACTTTTCTGAAAGTCAGTCCAAAAAGTGCCGTTTTTCGTCTCTCAGAAGCGTTGTGdnaA

dnanGTGTGATTGTTCCCTTCGTCGGATTGGCTGAGGAATATTCTAGCCGTTAGGTGGCGAACTTACGTACGCTGGATGACCGGCTGTTACTATGGCGATGATGCTTTTCACGTAACTGAGTAAGTAATCGCCATAATAAGGCCGGTGGATAGTGTGGATAAGTAGGGCTGAGCCCTACAACTGCAACGGTTCATAAGTCCCTGAAAATTGTGGACAAATTCTGCATGGCTTGTGGATAAGTGGGCGAGTTTTCCACAGCCAGTTCGTCGAATTTGAGTTTTCCACATCGAGGTCGCGGTTATGCACGAGTTTTCCACAACAAAATAGTGGGTAATCCACGAGTTATCCGCCGAGTTTACCCACATCTGTGCACAACTATGTGGATAACTTTTTTGGTTTTCGCACTTTCGCACGGCGTGTTGAAGACTGTTTTTCGTCGAGGAGAATCGATTCTGGAGACCGTTTTCGGCACTTTTTCCGTCTCGCTCGCCCAAACCCGCAAAATCGGTCCTCAGAATCGATTCTCTCGTTTCATGGTTTTTTTGCGTGTTCCCCTTCGAAACTCCCCTCAGTCGTCTGCGCCGACAGATCCCCTCACAAAGGGGAGCCATGAGGAATCTAATGTCTCGAATCCGTTGCCTCGACGTATCCACCAGAATCCGCCTGAGCAACCAAAAACGGCACTTTTCTGAAAGTCAGTCCAAAAAGTGCCGTTTTTCGTCTCTCAGAAGCGTTGTGdnaa

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif CGAGTTWTCCACM

Start	P-value		Site
303	1.65e-08	CGGTTATGCA	CGAGTTTTCCACA	ACAAAATAGT
242	1.65e-08	GATAAGTGGG	CGAGTTTTCCACA	GCCAGTTCGT
271	1.53e-07	TCGTCGAATT	TGAGTTTTCCACA	TCGAGGTCGC
336	2.95e-07	GGGTAATCCA	CGAGTTATCCGCC	GAGTTTACCC
639	5.57e-07	TCCGTTGCCT	CGACGTATCCACC	AGAATCCGCC

Motif TGTGGAYAAVT

Start	P-value		Site
376	5.47e-07	TGCACAACTA	TGTGGATAACT	TTTTTGGTTT
228	5.47e-07	CTGCATGGCT	TGTGGATAAGT	GGGCGAGTTT
150	5.47e-07	CGGTGGATAG	TGTGGATAAGT	AGGGCTGAGC
206	1.48e-06	CCCTGAAAAT	TGTGGACAAAT	TCTGCATGGC
364	2.50e-06	TACCCACATC	TGTGCACAACT	ATGTGGATAA

Motif CCHAAAACBGCA

Start	P-value		Site
669	9.07e-08	GCCTGAGCAA	CCAAAAACGGCA	CTTTTCTGAA
171	1.02e-06	AGGGCTGAGC	CCTACAACTGCA	ACGGTTCATA
698	1.13e-06	GAAAGTCAGT	CCAAAAAGTGCC	GTTTTTCGTC
487	1.50e-06	GTCTCGCTCG	CCCAAACCCGCA	AAATCGGTCC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI94010774	100.0	735	0	0	1	735	1	735	1358
ORI94010807	99.864	735	1	0	1	735	735	1	1352
ORI96010039	99.728	735	1	1	1	735	1	734	1345
ORI92510428	99.728	735	1	1	1	735	1	734	1345
ORI94010809	99.321	736	3	2	1	735	735	1	1330
ORI93010675	97.279	735	20	0	1	735	735	1	1247
ORI96010036	77.672	421	72	19	116	526	460	52	237