DoriC

RefSeq

NC_014169.1

Accession number

NC_014169.1

DoriC accession number

ORI93010675

OriC length

735 nt

OriC AT content

0.510204

The location of oriC region

1713..2447 nt

Browse in NCBI

OriC map

OriC sequences

dnaACACAACGCTTCTGAGAGACGAAAAACGGCACTTCTTGGACTGACTTTCCGAAAAGTGCCGTTTTTGGTTGCTCAGGCGGATTCTGGTGGATACGTCGAGGCAACGGATTCGAGACATCAGATTCCTCATGGCTCCCCTTTGTGAGGGGAGCTGTCGTCGCAGACGACTGAGGGGAGTTTCGAAGGGGAACACGCAAAAAACCCATGAAACGAGAGAATCGATTCTGAGGACCGATTTTGCGGGTTTGGGCGAGCGAGACGAAAAAAGTGCCGAAAACGGTCTCCAGAATCGATTCTCCTCGACGAAAAACAGCCTTCAACACGCCGTGCGAAAGTACGAAAACCAAAAAAGTTATCCACACAGTTGTGCACAGATGTGGGTAAACTCGGCGGATAACTCGTGGATTACCCACTGTTTTGTTGTGGAAAACTCGTGCATAACCGCGACCTCGATGTGGAAAACTCAAATTCGACGAACTGGCTGTGGAAAACTCGCCCACTTATCCACAAGCCATGCAGAATTTGTCCACAATTTTCAGGGACTTATGAACCGTTGCATTTGTAGGGCTCACCCCTACTTATCCACACTATCCACCGGCCTTATTACGACGATTACTTACTCAGTTACGTGAAAAGCATCATCGCCACAGTAACAGCCGGTCACCCATCGTACGTAAGTTCGCCACCTAACGGCTAGAATATTTTTCAGCCAATCCGACGAAGGGAACAATCACACdnaN

dnaaCACAACGCTTCTGAGAGACGAAAAACGGCACTTCTTGGACTGACTTTCCGAAAAGTGCCGTTTTTGGTTGCTCAGGCGGATTCTGGTGGATACGTCGAGGCAACGGATTCGAGACATCAGATTCCTCATGGCTCCCCTTTGTGAGGGGAGCTGTCGTCGCAGACGACTGAGGGGAGTTTCGAAGGGGAACACGCAAAAAACCCATGAAACGAGAGAATCGATTCTGAGGACCGATTTTGCGGGTTTGGGCGAGCGAGACGAAAAAAGTGCCGAAAACGGTCTCCAGAATCGATTCTCCTCGACGAAAAACAGCCTTCAACACGCCGTGCGAAAGTACGAAAACCAAAAAAGTTATCCACACAGTTGTGCACAGATGTGGGTAAACTCGGCGGATAACTCGTGGATTACCCACTGTTTTGTTGTGGAAAACTCGTGCATAACCGCGACCTCGATGTGGAAAACTCAAATTCGACGAACTGGCTGTGGAAAACTCGCCCACTTATCCACAAGCCATGCAGAATTTGTCCACAATTTTCAGGGACTTATGAACCGTTGCATTTGTAGGGCTCACCCCTACTTATCCACACTATCCACCGGCCTTATTACGACGATTACTTACTCAGTTACGTGAAAAGCATCATCGCCACAGTAACAGCCGGTCACCCATCGTACGTAAGTTCGCCACCTAACGGCTAGAATATTTTTCAGCCAATCCGACGAAGGGAACAATCACACdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif KGTGGAWAACTCG

Start	P-value		Site
482	1.52e-08	ACGAACTGGC	TGTGGAAAACTCG	CCCACTTATC
421	1.52e-08	ACTGTTTTGT	TGTGGAAAACTCG	TGCATAACCG
453	1.40e-07	GCGACCTCGA	TGTGGAAAACTCA	AATTCGACGA
388	2.72e-07	GGGTAAACTC	GGCGGATAACTCG	TGGATTACCC
85	5.19e-07	GGCGGATTCT	GGTGGATACGTCG	AGGCAACGGA

Motif ABTTRTCCACA

Start	P-value		Site
576	5.97e-07	GCTCACCCCT	ACTTATCCACA	CTATCCACCG
498	5.97e-07	AAACTCGCCC	ACTTATCCACA	AGCCATGCAG
350	5.97e-07	AAACCAAAAA	AGTTATCCACA	CAGTTGTGCA
520	1.59e-06	GCCATGCAGA	ATTTGTCCACA	ATTTTCAGGG
362	2.61e-06	TTATCCACAC	AGTTGTGCACA	GATGTGGGTA

Motif CGNTTYTG

Start	P-value		Site
232	1.01e-05	TTCTGAGGAC	CGATTTTG	CGGGTTTGGG
219	2.94e-05	ACGAGAGAAT	CGATTCTG	AGGACCGATT
59	2.94e-05	CGAAAAGTGC	CGTTTTTG	GTTGCTCAGG
6	7.50e-05	CACAA	CGCTTCTG	AGAGACGAAA
412	1.19e-04	GGATTACCCA	CTGTTTTG	TTGTGGAAAA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI93010675	100.0	735	0	0	1	735	1	735	1358
ORI94010809	97.554	736	16	2	1	735	1	735	1258
ORI94010807	97.415	735	19	0	1	735	1	735	1253
ORI96010039	97.415	735	18	1	1	735	734	1	1251
ORI92510428	97.415	735	18	1	1	735	734	1	1251
ORI94010774	97.279	735	20	0	1	735	735	1	1247
ORI96010036	77.197	421	74	19	210	620	52	460	226