RefSeq NC_004459.2
Accession number NC_004459.2
DoriC accession number ORI10020013
OriC length 468 nt
OriC AT content 0.628205
The location of oriC region 1012335..1012802 nt
Browse in NCBI
OriC map
OriC sequences
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
miocTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgida
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
mioCTGCCTATTGCGGGGGAAGCACTCCCTCGCTTTTCCCTTCTGTGAATAACCTTTCTACAAATCCCATCATCAATTCGACGAAAAATCACACGATCCATCTGTGGATAAAATAGAGAAGATCCAGTGTTTTTCCTATAGTTATCCAAATAATAACTTTTACACTTCGCGTCCCCTGTGCATAACCACCCATTTTGATCCCAGGTAATCCTTATGTAGATCAAATCATGATCACACGATATGATCCAAATAAGATCCATGATCTTGTTGATCATTTTTAACTTATCCACAGATCACCTCGATCCTAATAATAGATCCAATAAAAGATCATATATAAAGATCTTTATATATATTTAGTGGGATGATCTCGTGATTCGCGAGACGAAAACAATTTTCACTCATCCACAAAAGAAGGTAGAATATCGCTCTTTTTCTCTCACTGTTGAATCCTTTGAATACCTGAGGTCAGTTCgidA
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GATCCA

StartP-valueSite
3102.31e-04CCTAATAATAGATCCAATAAAAGATC
2502.31e-04ATCCAAATAAGATCCATGATCTTGTT
2392.31e-04CACACGATATGATCCAAATAAGATCC
1172.31e-04AAATAGAGAAGATCCAGTGTTTTTCC
912.31e-04AAAATCACACGATCCATCTGTGGATA

Motif GKGGGAWG

StartP-valueSite
111.74e-06TGCCTATTGCGGGGGAAGCACTCCCTCG
3535.55e-06TATATATTTAGTGGGATGATCTCGTGAT

Motif CTGTGVATAA

StartP-valueSite
986.49e-07CACGATCCATCTGTGGATAAAATAGAGAAG
1721.68e-06TTCGCGTCCCCTGTGCATAACCACCCATTT
393.08e-06CTTTTCCCTTCTGTGAATAACCTTTCTACA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI10020013 100.0 468 0 0 1 468 1 468 0.0 865
ORI10020017 99.573 468 2 0 1 468 468 1 0.0 854
ORI94030347 99.145 468 4 0 1 468 1 468 0.0 843
ORI92220051 80.253 395 64 12 80 468 387 1 0.0 285
ORI93020108 85.328 259 29 9 98 352 109 362 0.0 259