RefSeq NC_005139.1
Accession number NC_005139.1
DoriC accession number ORI10020017
OriC length 468 nt
OriC AT content 0.628205
The location of oriC region 3354390..352 nt
Browse in NCBI
OriC map
OriC sequences
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidaGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioc
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
gidAGAACTGACCTCAGGTATTCAAAGGATTCAACAGTGAGAGAAAAAGAGCGATATTCTACCTTCTTTTGTGGATGAGTGAAAATTGTTTTCGTCTCGCGAATCACGAGATCATCCCACTAAATATATATAAAGATCTTTATATATGATCTTTTATTGGATCTATTATTAGGATCGAGGTGATCTGTGGATAAGTTAAAAATGATCAACAAGATCATGGATCTTATTTGGATCATATCGTGTGATCATGATTTGATCTACATAAGGATTACCTGGGATCAAAATGGGTGGTTATACACAGGGGACGCGAAGTGTAAAAGTTATTATTTGGATAACTATAGGAAAAACACTGGATCTTCTCTATTTTATCCACAGATGGATCGTGTGATTTTTCGTCGAATTGACGATGGGATTTGTAGAAAGGTTATTCACAGAAGGGAAAAGCGAGGGAGTGCTTCCCCCGCAATAGGCAmioC
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TGGATC

StartP-valueSite
3732.28e-04TATCCACAGATGGATCGTGTGATTTT
3472.28e-04GGAAAAACACTGGATCTTCTCTATTT
2252.28e-04GGATCTTATTTGGATCATATCGTGTG
2142.28e-04AACAAGATCATGGATCTTATTTGGAT
1542.28e-04GATCTTTTATTGGATCTATTATTAGG

Motif CWTCCCMC

StartP-valueSite
4511.88e-06CGAGGGAGTGCTTCCCCCGCAATAGGCA
1095.96e-06ATCACGAGATCATCCCACTAAATATATA

Motif TTATHCACAG

StartP-valueSite
3626.70e-07CTTCTCTATTTTATCCACAGATGGATCGTG
4212.09e-06TGTAGAAAGGTTATTCACAGAAGGGAAAAG
2883.55e-06AAATGGGTGGTTATACACAGGGGACGCGAA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI10020017 100.0 468 0 0 1 468 1 468 0.0 865
ORI10020013 99.573 468 2 0 1 468 468 1 0.0 854
ORI94030347 99.145 468 4 0 1 468 468 1 0.0 843
ORI92220051 80.0 395 65 12 1 389 1 387 0.0 279
ORI93020108 85.714 259 28 9 117 371 362 109 0.0 265