DoriC

RefSeq

GCF_000220135.1

Accession number

NC_020517.1

DoriC accession number

ORI97010130

OriC length

575 nt

OriC AT content

0.549565

The location of oriC region

1468..2042 nt

Browse in NCBI

OriC map

OriC sequences

dnaAGTATGCCTATGGCTTCCTTTACGGGAGCCATTTTTTATATCTGCGCATATCCGAGAGAATCGTTCCTGAAGACCGATTTTGGCACTTTTTCAAACCGAGCCAGAAAAAGTGCCGAAAACCGTCCTCAGAATCGATTCTCCTCGCCGATAATCATGTTCAACACGCCGTGCAAAGACCCAATAATCATGAAAGTTATCCACATAGTTGTTCACAAATGTGGGCAAACTCGGCGGATAACTCGTGGATTACCCACTATTTTTCGGTGGAAACTTGGTGCATAACATGGTCTTCTGTGTGGAAAACTTAACAATTGACTTTTTCCTGTGGATAAGTCGCCTATTTATCCACACGCTATACAGAAGTTATCCACAACACTCCCCAGTGGATAAGCCGTTACCGCAGTAGCCCTCCATCCACTTATCCACACTATCCACCGCACTTATTACGACGATTACTTACTTGCATACATAAGATCACCGTCATGGTGATAATCGGCCGCATCAAGCACGCAAGCAAAAGAACCAACCAACCGCTAGAATGTTCTTCAGCAAAACCGACGAAGGGAACAACCTGACdnaN

dnaaGTATGCCTATGGCTTCCTTTACGGGAGCCATTTTTTATATCTGCGCATATCCGAGAGAATCGTTCCTGAAGACCGATTTTGGCACTTTTTCAAACCGAGCCAGAAAAAGTGCCGAAAACCGTCCTCAGAATCGATTCTCCTCGCCGATAATCATGTTCAACACGCCGTGCAAAGACCCAATAATCATGAAAGTTATCCACATAGTTGTTCACAAATGTGGGCAAACTCGGCGGATAACTCGTGGATTACCCACTATTTTTCGGTGGAAACTTGGTGCATAACATGGTCTTCTGTGTGGAAAACTTAACAATTGACTTTTTCCTGTGGATAAGTCGCCTATTTATCCACACGCTATACAGAAGTTATCCACAACACTCCCCAGTGGATAAGCCGTTACCGCAGTAGCCCTCCATCCACTTATCCACACTATCCACCGCACTTATTACGACGATTACTTACTTGCATACATAAGATCACCGTCATGGTGATAATCGGCCGCATCAAGCACGCAAGCAAAAGAACCAACCAACCGCTAGAATGTTCTTCAGCAAAACCGACGAAGGGAACAACCTGACdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AGTTATCCACA

Start	P-value		Site
361	4.32e-07	GCTATACAGA	AGTTATCCACA	ACACTCCCCA
191	4.32e-07	TAATCATGAA	AGTTATCCACA	TAGTTGTTCA
339	1.71e-06	TAAGTCGCCT	ATTTATCCACA	CGCTATACAG
416	2.33e-06	CCCTCCATCC	ACTTATCCACA	CTATCCACCG
203	2.59e-06	TTATCCACAT	AGTTGTTCACA	AATGTGGGCA

Motif TTYYCDGTGGAWAABTCG

Start	P-value		Site
318	2.08e-10	CAATTGACTT	TTTCCTGTGGATAAGTCG	CCTATTTATC
257	1.64e-08	TACCCACTAT	TTTTCGGTGGAAACTTGG	TGCATAACAT
376	2.29e-08	TCCACAACAC	TCCCCAGTGGATAAGCCG	TTACCGCAGT
224	3.14e-08	AATGTGGGCA	AACTCGGCGGATAACTCG	TGGATTACCC
289	5.12e-08	TAACATGGTC	TTCTGTGTGGAAAACTTA	ACAATTGACT

Motif GSCGADAATCDTCYTCADCA

Start	P-value		Site
143	1.48e-09	GATTCTCCTC	GCCGATAATCATGTTCAACA	CGCCGTGCAA
111	1.99e-09	CAGAAAAAGT	GCCGAAAACCGTCCTCAGAA	TCGATTCTCC
484	2.40e-09	TCACCGTCAT	GGTGATAATCGGCCGCATCA	AGCACGCAAG
531	9.67e-09	ACCAACCAAC	CGCTAGAATGTTCTTCAGCA	AAACCGACGA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96010036	98.783	575	7	0	1	575	1	575	1024
ORI96010039	77.778	414	84	8	52	460	526	116	248
ORI94010807	77.778	414	84	8	52	460	210	620	248
ORI94010774	77.778	414	84	8	52	460	526	116	248
ORI92510428	77.778	414	84	8	52	460	526	116	248
ORI94010809	77.349	415	85	9	52	460	209	620	237
ORI93010675	77.053	414	87	8	52	460	210	620	231