RefSeq NC_017276.1
DoriC accession number aORI10010116
OriC length 189 nt
OriC AT content 0.7143
The location of oriC region 1162260..1162448 nt
Browse in NCBI
OriC map
OriC sequences
CTTTCCCTTCTCCTTTTGGCATTATAATTACTACTACTATATGTACGTTAAATTATAAGTACATTGAAAGAAAGATCAAGATTATACAAACCATTCATTTTAATACTCTTATAATAGGAGCAGATCAGTAGTAGTAGTAATCTATTTAATCTTTGTACTAGAAGTTATAGCAAGTAGGAGGGAGAATTT
CTTTCCCTTCTCCTTTTGGCATTATAATTACTACTACTATATGTACGTTAAATTATAAGTACATTGAAAGAAAGATCAAGATTATACAAACCATTCATTTTAATACTCTTATAATAGGAGCAGATCAGTAGTAGTAGTAATCTATTTAATCTTTGTACTAGAAGTTATAGCAAGTAGGAGGGAGAATTT
CTTTCCCTTCTCCTTTTGGCATTATAATTACTACTACTATATGTACGTTAAATTATAAGTACATTGAAAGAAAGATCAAGATTATACAAACCATTCATTTTAATACTCTTATAATAGGAGCAGATCAGTAGTAGTAGTAATCTATTTAATCTTTGTACTAGAAGTTATAGCAAGTAGGAGGGAGAATTT
ORB     AT-rich region
The information of repeat sequences

Motif AGTAGNAG

StartP-valueSite
1731.53e-05AGTTATAGCAAGTAGGAGGGAGAATTT
1161.84e-05CTCTTATAATAGGAGCAGATCAGTAGTA
1275.91e-05GGAGCAGATCAGTAGTAGTAGTAATCTA
1571.30e-04TAATCTTTGTACTAGAAGTTATAGCAAG

Motif CCMTTC

StartP-valueSite
54.92e-05CTTTCCCTTCTCCTTTTGGC
911.73e-04ATTATACAAACCATTCATTTTAATAC

Motif ATTATAWKTAC

StartP-valueSite
522.59e-06TGTACGTTAAATTATAAGTACATTGAAAGAA
363.33e-06AATTACTACTACTATATGTACGTTAAATTAT
211.14e-05TCCTTTTGGCATTATAATTACTACTACTATA
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
aORI10010268 100.0 189 0 0 1 189 1 189 0.0 350
aORI10010116 100.0 189 0 0 1 189 1 189 0.0 350
aORI10010113 100.0 189 0 0 1 189 1 189 0.0 350
aORI10010087 99.471 189 1 0 1 189 1 189 0.0 344
aORI10010066 99.471 189 1 0 1 189 1 189 0.0 344
aORI10010063 99.471 189 1 0 1 189 1 189 0.0 344
aORI10010069 98.942 189 2 0 1 189 189 1 0.0 339
aORI10010075 97.884 189 4 0 1 189 1 189 0.0 327
aORI10010072 97.354 189 5 0 1 189 1 189 0.0 322
aORI10010060 97.354 189 5 0 1 189 1 189 0.0 322
aORI10010360 78.646 192 33 7 1 189 188 2 1.73e-29 121
aORI10010338 78.646 192 33 7 1 189 188 2 1.73e-29 121
aORI10010335 78.646 192 33 7 1 189 188 2 1.73e-29 121
aORI10010332 78.646 192 33 7 1 189 188 2 1.73e-29 121
aORI10010111 78.646 192 33 7 1 189 188 2 1.73e-29 121
aORI10010012 78.646 192 33 7 1 189 188 2 1.73e-29 121