RefSeq NC_017274.1
DoriC accession number aORI10010111
OriC length 188 nt
OriC AT content 0.6968
The location of oriC region 1646307..1646494 nt
Browse in NCBI
OriC map
OriC sequences
TAAATTCTCCCTCCTACTTGCTATAACTTTCAGAACAAAGATTAAATAGATTACTACTACTACTCATATGTTTCCGTCTTAGAGCTTTAAAACGAAAGGTTTGTATAATTTTCCCCAATATGCCCATAGAAGTATAACTTAAGCTAACACATAGTAGTAGTAAATAATTATAAAAGGAGAAGAGAAAG
TAAATTCTCCCTCCTACTTGCTATAACTTTCAGAACAAAGATTAAATAGATTACTACTACTACTCATATGTTTCCGTCTTAGAGCTTTAAAACGAAAGGTTTGTATAATTTTCCCCAATATGCCCATAGAAGTATAACTTAAGCTAACACATAGTAGTAGTAAATAATTATAAAAGGAGAAGAGAAAG
TAAATTCTCCCTCCTACTTGCTATAACTTTCAGAACAAAGATTAAATAGATTACTACTACTACTCATATGTTTCCGTCTTAGAGCTTTAAAACGAAAGGTTTGTATAATTTTCCCCAATATGCCCATAGAAGTATAACTTAAGCTAACACATAGTAGTAGTAAATAATTATAAAAGGAGAAGAGAAAG
ORB     AT-rich region
The information of repeat sequences

Motif CTAMWASTWBBYATAWBTTTCMS

StartP-valueSite
112.03e-11TAAATTCTCCCTCCTACTTGCTATAACTTTCAGAACAAAGATT
545.18e-11AAATAGATTACTACTACTACTCATATGTTTCCGTCTTAGAGCT
936.83e-10AGCTTTAAAACGAAAGGTTTGTATAATTTTCCCCAATATGCCC

Motif CMCATAGWAGT

StartP-valueSite
1233.45e-07CCCCAATATGCCCATAGAAGTATAACTTAAG
1486.88e-07CTTAAGCTAACACATAGTAGTAGTAAATAAT

Motif KWAGAG

StartP-valueSite
1792.52e-04TATAAAAGGAGAAGAGAAAG
795.07e-04TGTTTCCGTCTTAGAGCTTTAAAACG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
aORI10010360 100.0 188 0 0 1 188 1 188 0.0 348
aORI10010338 100.0 188 0 0 1 188 1 188 0.0 348
aORI10010335 100.0 188 0 0 1 188 1 188 0.0 348
aORI10010332 100.0 188 0 0 1 188 1 188 0.0 348
aORI10010111 100.0 188 0 0 1 188 1 188 0.0 348
aORI10010012 100.0 188 0 0 1 188 1 188 0.0 348
aORI10010075 80.0 190 34 3 2 188 189 1 1.71e-34 137
aORI10010072 80.0 190 34 3 2 188 189 1 1.71e-34 137
aORI10010060 80.0 190 34 3 2 188 189 1 1.71e-34 137
aORI10010268 78.646 192 33 5 2 188 189 1 1.72e-29 121
aORI10010116 78.646 192 33 5 2 188 189 1 1.72e-29 121
aORI10010113 78.646 192 33 5 2 188 189 1 1.72e-29 121
aORI10010069 78.646 192 33 5 2 188 1 189 1.72e-29 121
aORI10010087 78.125 192 34 5 2 188 189 1 8.02e-28 115
aORI10010066 78.125 192 34 5 2 188 189 1 8.02e-28 115
aORI10010063 78.125 192 34 5 2 188 189 1 8.02e-28 115