Basic Information

Assembly acc GCF_002117875.1
Acc NZ_CP020870.1
OriID ORI97013605
Organism Xylella fastidiosa subsp. pauca
Topology Circular
Lineage Bacteria ; Pseudomonadati ; Pseudomonadota ; Gammaproteobacteria ; Lysobacterales ; Lysobacteraceae ; Xylella ; Xylella fastidiosa
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2508465 nt
Chromosome GC content 51.98%
Indicator genes
  • dnaA      13... 1332nt
  • dnaN      1618... 2718nt
  • hemB      760519... 761523nt
  • gidA      947818... 949707nt
  • hemE      1644691... 1645755nt
  • rpmH      2508115... 2508255nt
OriC location
  • 1333 ... 1617 nt
OriC Length
  • 285 nt
OriC AT Content
  • 0.7333

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000246
Cluster members 39
Distinct accessions 39
Species / genera 1 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97020749 NZ_CP016610.1 Xylella fastidiosa 100.00% 100.00% Not linked
2 ORI97011420 NZ_CP009826.2 Xylella fastidiosa 98.60% 100.00% Not linked
3 ORI97011419 NZ_CP009823.1 Xylella fastidiosa 98.20% 100.00% Not linked
4 ORI97011424 NZ_CP009885.1 Xylella fastidiosa 98.20% 100.00% Not linked
5 ORI97011423 NZ_CP009829.2 Xylella fastidiosa 97.20% 100.00% Not linked
6 ORI10010009 NC_002488.3 Xylella fastidiosa 9a5c 95.20% 100.00% Not linked
7 ORI97011416 NZ_CP009790.1 Xylella fastidiosa 95.20% 100.00% Not linked
8 ORI10010087 NC_004556.1 Xylella fastidiosa Temecula1 95.60% 95.80% Not linked
9 ORI92310397 NC_010577.1 Xylella fastidiosa M23 95.60% 95.80% Not linked
10 ORI97021433 NZ_CP090514.1 Xylella fastidiosa subsp. fastidiosa 95.60% 95.80% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP020870.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
13 1332 MESWSRCLERLETEFPPEDV...

OriC Visualization

OriC map
OriC sequences
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaaCTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnan
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAATTTCTACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010009 95.29% 297 1 2 1 285 1 296 0.0 459.0
ORI92310397 96.28% 269 10 0 14 282 10 278 0.0 442.0
ORI10010087 96.28% 269 10 0 14 282 10 278 0.0 442.0
ORI96010143 95.91% 269 10 1 14 282 10 277 0.0 435.0
ORI92310386 93.75% 272 13 2 14 282 12 282 0.0 405.0
Found 5 BLAST matches
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