Basic Information

Assembly acc GCF_001456235.1
Acc NZ_CP009823.1
OriID ORI97011419
Organism Xylella fastidiosa
Topology Circular
Lineage Bacteria ; Pseudomonadati ; Pseudomonadota ; Gammaproteobacteria ; Lysobacterales ; Lysobacteraceae ; Xylella ; Xylella fastidiosa
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2788789 nt
Chromosome GC content 52.91%
Indicator genes
  • dnaA      143... 1462nt
  • dnaN      1750... 2850nt
  • hemB      811578... 812582nt
  • hemE      1097536... 1098600nt
  • gidA      2000849... 2002738nt
  • rpmH      2788569... 2788709nt
OriC location
  • 1463 ... 1749 nt
OriC Length
  • 287 nt
OriC AT Content
  • 0.7317

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000246
Cluster members 39
Distinct accessions 39
Species / genera 1 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97011420 NZ_CP009826.2 Xylella fastidiosa 98.90% 100.00% Not linked
2 ORI97011423 NZ_CP009829.2 Xylella fastidiosa 98.90% 100.00% Not linked
3 ORI97011424 NZ_CP009885.1 Xylella fastidiosa 98.90% 100.00% Not linked
4 ORI97013605 NZ_CP020870.1 Xylella fastidiosa subsp. pauca 98.20% 100.00% Not linked
5 ORI97020749 NZ_CP016610.1 Xylella fastidiosa 98.20% 100.00% Not linked
6 ORI10010009 NC_002488.3 Xylella fastidiosa 9a5c 96.90% 100.00% Not linked
7 ORI97011416 NZ_CP009790.1 Xylella fastidiosa 96.90% 100.00% Not linked
8 ORI92310386 NC_010513.1 Xylella fastidiosa M12 94.10% 95.80% Not linked
9 ORI97010874 NZ_CP006696.1 Xylella fastidiosa subsp. sandyi Ann-1 94.10% 95.80% Not linked
10 ORI97020915 NZ_CP064325.1 Xylella fastidiosa subsp. multiplex 94.10% 95.80% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP009823.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
143 1462 MESWSRCLERLETEFPPEDV...

OriC Visualization

OriC map
OriC sequences
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaaCTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnan
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010009 96.96% 296 0 1 1 287 1 296 0.0 488.0
ORI92310386 94.83% 271 14 0 14 284 12 282 0.0 424.0
ORI96010143 94.83% 271 11 1 14 284 10 277 0.0 420.0
ORI92310397 94.49% 272 11 2 14 284 10 278 0.0 416.0
ORI10010087 94.49% 272 11 2 14 284 10 278 0.0 416.0
Found 5 BLAST matches
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