Basic Information

Assembly acc GCF_001456315.1
Acc NZ_CP009885.1
OriID ORI97011424
Organism Xylella fastidiosa
Topology Circular
Lineage Bacteria ; Pseudomonadati ; Pseudomonadota ; Gammaproteobacteria ; Lysobacterales ; Lysobacteraceae ; Xylella ; Xylella fastidiosa
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2813297 nt
Chromosome GC content 52.70%
Indicator genes
  • dnaA      143... 1462nt
  • dnaN      1751... 2851nt
  • hemB      813127... 814131nt
  • gidA      1055764... 1057653nt
  • hemE      1905480... 1906544nt
  • rpmH      2813077... 2813217nt
OriC location
  • 1463 ... 1750 nt
OriC Length
  • 288 nt
OriC AT Content
  • 0.7222

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000246
Cluster members 39
Distinct accessions 39
Species / genera 1 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97011420 NZ_CP009826.2 Xylella fastidiosa 99.60% 100.00% Not linked
2 ORI97011419 NZ_CP009823.1 Xylella fastidiosa 98.90% 100.00% Not linked
3 ORI97011423 NZ_CP009829.2 Xylella fastidiosa 98.20% 100.00% Not linked
4 ORI97013605 NZ_CP020870.1 Xylella fastidiosa subsp. pauca 98.20% 100.00% Not linked
5 ORI97020749 NZ_CP016610.1 Xylella fastidiosa 98.20% 100.00% Not linked
6 ORI10010009 NC_002488.3 Xylella fastidiosa 9a5c 96.20% 100.00% Not linked
7 ORI97011416 NZ_CP009790.1 Xylella fastidiosa 96.20% 100.00% Not linked
8 ORI10010087 NC_004556.1 Xylella fastidiosa Temecula1 93.80% 95.80% Not linked
9 ORI92310386 NC_010513.1 Xylella fastidiosa M12 93.80% 95.80% Not linked
10 ORI92310397 NC_010577.1 Xylella fastidiosa M23 93.80% 95.80% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP009885.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
143 1462 MESWSRCLERLETEFPPEDV...

OriC Visualization

OriC map
OriC sequences
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaaCTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnan
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAAGTTTCCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010009 96.62% 296 2 2 1 288 1 296 0.0 484.0
ORI92310386 94.49% 272 14 1 14 285 12 282 0.0 418.0
ORI96010143 94.49% 272 11 2 14 285 10 277 0.0 416.0
ORI92310397 94.49% 272 12 1 14 285 10 278 0.0 416.0
ORI10010087 94.49% 272 12 1 14 285 10 278 0.0 416.0
Found 5 BLAST matches
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