Basic Information

Assembly acc GCF_001456275.1
Acc NZ_CP009790.1
OriID ORI97011416
Organism Xylella fastidiosa
Topology Circular
Lineage Bacteria ; Pseudomonadati ; Pseudomonadota ; Gammaproteobacteria ; Lysobacterales ; Lysobacteraceae ; Xylella ; Xylella fastidiosa
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2681334 nt
Chromosome GC content 52.68%
Indicator genes
  • dnaA      143... 1462nt
  • dnaN      1759... 2859nt
  • hemE      1283183... 1284247nt
  • gidA      2002087... 2003976nt
  • hemB      2190534... 2191538nt
  • rpmH      2681114... 2681254nt
OriC location
  • 1463 ... 1758 nt
OriC Length
  • 296 nt
OriC AT Content
  • 0.7196

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000246
Cluster members 39
Distinct accessions 39
Species / genera 1 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI10010009 NC_002488.3 Xylella fastidiosa 9a5c 100.00% 100.00% Not linked
2 ORI97011423 NZ_CP009829.2 Xylella fastidiosa 97.90% 100.00% Not linked
3 ORI97011419 NZ_CP009823.1 Xylella fastidiosa 96.90% 100.00% Not linked
4 ORI97011420 NZ_CP009826.2 Xylella fastidiosa 96.20% 100.00% Not linked
5 ORI97011424 NZ_CP009885.1 Xylella fastidiosa 96.20% 100.00% Not linked
6 ORI97013605 NZ_CP020870.1 Xylella fastidiosa subsp. pauca 95.20% 100.00% Not linked
7 ORI97020749 NZ_CP016610.1 Xylella fastidiosa 95.20% 100.00% Not linked
8 ORI97027801 NZ_CP090511.1 Xylella fastidiosa subsp. multiplex 93.30% 95.90% Not linked
9 ORI92310386 NC_010513.1 Xylella fastidiosa M12 91.10% 95.90% Not linked
10 ORI97010874 NZ_CP006696.1 Xylella fastidiosa subsp. sandyi Ann-1 91.10% 95.90% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP009790.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
143 1462 MESWSRCLERLETEFPPEDV...

OriC Visualization

OriC map
OriC sequences
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaaCTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnan
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
dnaACTCCCCTACTTTTTTATATGACTACTCATTTTCTATAGAAATGTAAAAATAAATTAATTCTTTCCAAGGAAGTGTAAAAAACTTGTGGATAAAATAAGATTTAAATTTTTATAAAAATTTATCCACAGATTTTCCAGATGATCTAAGCACAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGCACTTCTCCACAAAAAAATTTCTACCACCACCACCACCACCACCACCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACAAAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI10010009 100.00% 296 0 0 1 296 1 296 0.0 547.0
ORI92310386 91.79% 280 14 1 14 293 12 282 0.0 381.0
ORI96010143 91.79% 280 11 1 14 293 10 277 0.0 379.0
ORI92310397 91.46% 281 11 2 14 293 10 278 0.0 374.0
ORI10010087 91.46% 281 11 2 14 293 10 278 0.0 374.0
Found 5 BLAST matches
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