DoriC

RefSeq

NC_019231

DoriC accession number

pORI00000107

OriC length

1709 nt

OriC AT content

0.6477

The location of oriC region

2448..779 nt

Browse in NCBI

OriC map

OriC sequences

AATAATCACTCCTTTCTATATTCTCACTTCAATTGTTATTATAGTCCAAAAAAGTCAGTTTTCAAGTATTATGTCTTTGAAATTGTAAAATCGTGCTACGGGCGTTTTATAGGGGTTTAACAACGTCACTATTTTAGTTCGTCCAACTGTTGGACAATTAGGACGTTTTATACCGACATTTTCTAACAAATTCAATTGTTCGCAAAACGAACAAACAAACCTTGTTCTTTCTAGTACACTAAATTTAATTGTTCCTAAATTGTGCGACGTGGTAGAATTTGGAAGCTCTTAAATGTCGTAACGTTTCGACATTTGGAAGCTCCTAAATGTTGTAACGTTGCAATATTTGGAAGTTCTTAAAAGCGACTACGTGGTCGTATTTGATATATGTAGGGTGTAAAATTTTCCACGACCTAGCAAGAAAGAAAGTCAAAGACTACGTTATCAAGTTGGAAAATGTCCAACCAAATTGGAAAAATTCCAACCAGTTTCCAACCAGTGTCCAACAGAGATAGAGTTAGAATTAGAGTTAAATCTAGATATAAAGACAGAAGTAGAAGAGAGAAATAGACAGATGTCTTCTGCTACTGCTGAATTACACTTATAAGCGTCTATCACAAACTGTTAGACAATTCTAACCAAACGACAACCATTTGGCAACCCAATATAAGTAAAGATAATATAAGTAAAGATAATATAAGTAAAGTCAGTATAAGTGAAGATAGTATAAGTGAATATAATTCAGTAAAAGATAATTCATGTGGTCAACTTGGTTGGTTGAGTTGCCTTGAGCTGTTAGTCTTTTTTGACTAATAGCTATAAATTTTAGCCAGGCGATTTATGCCGAGAAAACTCTTGTCAGTAAGCTGAGCGATTTAGACTGAAAGTGTCTGAGTCGCAAGACCGAAAGCTTGCGATAAGGACACGAAGTCTAGAAAATCAGCGAAAGGTTACTTGCTGACAAGAGGAAATTGGAATAAAAAGCCTTAATTTTTGAGTGATGTCATTTCTTCCATGTCATATCTCTTTCATATGCCCCTAATTCTCAAATTTCGGGGGTTATTTGCCGTTTTACCGTCTCTCTAGTAAATGTACCGCTAGATTATTTAGGACGGTTACAAGCGATTTTAGAGCCATTTCTTGCCCTTTTGGATAAAGTAAGCTCTGACTTGCTTTCCTTTATCGGTACGCTGTATCATAGCAATTTATTTTGCTATGTTCAGCTTTATGATGTGGTCGGTCATATCTTGCAGATCTCCAAGGGTGGTACATTTTTGGGTCATCCTTAAATAGTCCTCGTTTTTGGCAAAACCATATAGCTAGATGTTCGAACCTGCTCAAATTTGAGCGTATTGAAATCTTGATTTTGCTGTGTAGTTGTAACTACGGAGCCATATTTCTCGTTGTTCTCTCGTGCTTCTTTGGTGAATTTTTCCTGAAAGTAAAAAGAGGGCTGAAAGCCCAAAAAAAGCAGTCGAAAGACTGCTTTCTTCTTATCTTGATACTAGTAGGAAATAACTCTCACGCAAAAATCATATCACCATGACCTTGTAAACCCTTGATACTACTGGATTTTTAGGCAAAAAAAAAGCTCCTTTACGGTATAAAGCTTTCGTGTTATAATTTAAGGTGCTTAATCAAAAATTATGAAAGGATAACGTAAGGAGTTTTTTTTATTTCTTTGTTATTATAACAGGTAAGATTATATC

AT-rich region

The information of repeat sequences

Motif CYTAAATGTTGBAACGTKGYVRHATTTGR

Start	P-value		Site
322	8.41e-15	TTTGGAAGCT	CCTAAATGTTGTAACGTTGCAATATTTGG	AAGTTCTTAA
254	1.89e-13	TTTAATTGTT	CCTAAATTGTGCGACGTGGTAGAATTTGG	AAGCTCTTAA
288	1.39e-12	TTTGGAAGCT	CTTAAATGTCGTAACGTTTCGACATTTGG	AAGCTCCTAA
356	6.60e-12	TTTGGAAGTT	CTTAAAAGCGACTACGTGGTCGTATTTGA	TATATGTAGG
1319	7.83e-12	AAACCATATA	GCTAGATGTTCGAACCTGCTCAAATTTGA	GCGTATTGAA

Motif AGAYARTATAAGTRA

Start	P-value		Site
720	2.14e-08	GTATAAGTGA	AGATAGTATAAGTGA	ATATAATTCA
690	5.14e-08	ATATAAGTAA	AGATAATATAAGTAA	AGTCAGTATA
675	5.14e-08	ATATAAGTAA	AGATAATATAAGTAA	AGATAATATA
705	7.89e-08	ATATAAGTAA	AGTCAGTATAAGTGA	AGATAGTATA
660	1.81e-07	CCATTTGGCA	ACCCAATATAAGTAA	AGATAATATA

Motif MGGRCGTTTTATRSCG

Start	P-value		Site
160	5.10e-09	TTGGACAATT	AGGACGTTTTATACCG	ACATTTTCTA
99	5.65e-09	AATCGTGCTA	CGGGCGTTTTATAGGG	GTTTAACAAC
831	1.69e-08	AAATTTTAGC	CAGGCGATTTATGCCG	AGAAAACTCT
1054	5.86e-08	TCTCAAATTT	CGGGGGTTATTTGCCG	TTTTACCGTC
1109	3.02e-07	TAGATTATTT	AGGACGGTTACAAGCG	ATTTTAGAGC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000107	100.0	1709	0	0	1	1709	1	1709	0.0	3157
pORI00000108	99.872	782	1	0	928	1709	531	1312	0.0	1439
pORI00000108	96.709	547	3	11	1	540	1	539	0.0	896
pORI00000010	86.7	203	24	3	1425	1626	636	836	0.0	222
pORI00000150	73.913	276	44	21	1445	1707	224	484	2.13e-17	86
pORI00000001	77.108	166	25	10	1487	1646	58	216	7.65e-17	84